当前解析结果
SmilChr08G000397| 统一新 Gene ID | SmilChr08G000397 |
|---|---|
| 名称 | SmilChr08G000397 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2791762 - 2793381 / - |
| NCBI Gene ID | LOC130997126 |
|---|---|
| GeneID | 130997126 |
| locus_tag | - |
| NCBI Name | LOC130997126 |
| 原始查询 | SmilChr08G000397 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.9; qcov=0.783; evalue=1.5e-41; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=34.3; qcov=0.931; evalue=1.95e-53; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF23247 (LRR_RPS2); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997126 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778371.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057778371.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057778371.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778371.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778371.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2791763 |
C |
CG |
1bp_insertion | frameshift_variant | 12 | B106,B129,B131,B22,B59,B70,C5,C52,C55,C75,D2,D5 |
Chr8:2791768 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B59,C27,D9 |
Chr8:2791768 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B59,C27,D9 |
Chr8:2791770 |
GA |
G |
1bp_deletion | frameshift_variant | 17 | A21,B106,B129,B131,B22,B28,B67,B70,B78,B8,C5,C52,C55,C75,D2,D5,D7 |
Chr8:2791782 |
AT |
A |
1bp_deletion | frameshift_variant | 22 | A15,A19,B10,B100,B11,B119,B139,B19,B21,B34,B44,B66,B8,B84,B90,B92,B99,C2,C27,C37,C56,D9 |
Chr8:2791783 |
T |
TG |
1bp_insertion | frameshift_variant | 10 | B106,B129,B131,B22,B70,C16,C55,C75,D2,D5 |
Chr8:2791799 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | B26,B3,B5,B61,B72,C19,C42,C58,C78 |
Chr8:2791830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B139,B66,B8,C37 |
Chr8:2791846 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 9 | B106,B131,B22,B70,C18,C5,C55,D2,D5 |
Chr8:2791849 |
AAT |
A |
2bp_deletion | frameshift_variant | 8 | B106,B131,B70,C18,C5,C55,D2,D5 |
Chr8:2791886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B43,C11,C60,C68 |
Chr8:2791918 |
GCA |
G |
2bp_deletion | frameshift_variant | 14 | A10,A7,B104,B108,B119,B56,B93,C23,C32,C33,C45,C74,C85,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778371.1PF23598
LRR_14 6-294 aa
PF25019
LRR_R13L1-DRL21 132-260 aa
PF23247
LRR_RPS2 215-342 aa
PF23247
LRR_RPS2 375-514 aa
PF25019
LRR_R13L1-DRL21 449-512 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778371.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 6 | 294 | 4.6e-47 | 161.2 | Leucine-rich repeat region |
XP_057778371.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 132 | 260 | 7.8e-49 | 165.5 | R13L1/DRL21 LRRs |
XP_057778371.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 215 | 342 | 8.8e-15 | 55.7 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057778371.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 375 | 514 | 8.8e-15 | 55.7 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057778371.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 449 | 512 | 7.8e-49 | 165.5 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。