Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000403`

染色体: Chr08 坐标: 2825820-2830342 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000403`
名称	SmilChr08G000403
描述	disease resistance protein RGA2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2825820 - 2830342 / `-`

ID 对照

NCBI Gene ID	`LOC130999988`
GeneID	`130999988`
locus_tag	`-`
NCBI Name	`LOC130999988`
原始查询	`SmilChr08G000403`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RGA2-like
产物	disease resistance protein RGA2-like
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.7; qcov=0.895; evalue=2.43e-113; confidence=low
Rice	`Os05g0492200` (YR1) - identity=31.9; qcov=1.04; evalue=1.13e-136; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF05729 (NACHT); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999988

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781684.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781684.1`
3	Nucleus	细胞核	0.00000	`XP_057781684.1`
4	Chromosome	染色体	0.00000	`XP_057781684.1`
5	Centromere	着丝粒	0.00000	`XP_057781684.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2826762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B48
`Chr8:2826829`	`T`	`TAA`	2bp_insertion	frameshift_variant	8	B118,B30,B44,B97,C26,C34,C39,C9
`Chr8:2826842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B103,B24,B95
`Chr8:2826845`	`ATC`	`*`	2bp_deletion	CDS_variant	4	A13,A19,B65,C41
`Chr8:2826846`	`TCC`	`T`	2bp_deletion	frameshift_variant	14	B102,B131,B28,B29,B4,B48,B67,B8,C27,C43,C63,C71,C83,D3
`Chr8:2826849`	`C`	`T`	EMS_canonical_SNV	stop_gained	13	A4,A8,B15,B52,B74,B76,B80,B94,C61,C73,C84,D3,D4
`Chr8:2826850`	`A`	`AGT`	2bp_insertion	frameshift_variant	15	B102,B131,B28,B29,B4,B48,B67,B8,C16,C27,C43,C63,C71,C83,D3
`Chr8:2826904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:2826906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B29,B54,B85
`Chr8:2826913`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B54,C56
`Chr8:2826920`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B15,C59
`Chr8:2826937`	`AAT`	`A`	2bp_deletion	frameshift_variant	174	A1,A10,A11,A13,A14,A15,A18,A19,A2,A22,A5,A6,A7,B1,B100,B101,B102,B104,B105,B106,B108,B109,B11,B113,B115,B117,B118,B119,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B133,B134,B136,B137,B138,B140,B15,B16,B18,B19,B2,B20,B21,B22,B26,B28,B3,B30,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B53,B54,B55,B56,B57,B58,B59,B6,B61,B62,B65,B66,B69,B7,B76,B77,B79,B8,B83,B84,B85,B86,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C10,C11,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C32,C33,C34,C35,C36,C37,C38,C39,C40,C42,C43,C45,C47,C49,C5,C50,C52,C54,C56,C58,C6,C60,C61,C62,C63,C64,C65,C68,C69,C71,C72,C74,C78,C80,C81,C82,C85,C87,C9,D11,D2,D3,D4,D5,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781684.1

1129 aa

564

1129

Rx_N

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

LRR_R13L1-DRL21

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 175-341 aa PF05729 NACHT 192-337 aa PF23559 WHD_DRP 425-496 aa PF23598 LRR_14 532-814 aa PF25019 LRR_R13L1-DRL21 658-782 aa PF23247 LRR_RPS2 748-862 aa PF25019 LRR_R13L1-DRL21 1033-1096 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781684.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	4.4e-20	72.3	Rx N-terminal domain
`XP_057781684.1`	Pfam	`PF00931`	NB-ARC	Domain	175	341	1.2e-33	116.8	NB-ARC domain
`XP_057781684.1`	Pfam	`PF05729`	NACHT	Domain	192	337	3.1e-07	31.1	NACHT domain
`XP_057781684.1`	Pfam	`PF23559`	WHD_DRP	Domain	425	496	8.6e-25	87.3	Disease resistance protein Winged helix domain
`XP_057781684.1`	Pfam	`PF23598`	LRR_14	Repeat	532	814	3.9e-48	164.7	Leucine-rich repeat region
`XP_057781684.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	658	782	9.4e-50	168.5	R13L1/DRL21 LRRs
`XP_057781684.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	748	862	9.2e-17	62.2	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781684.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1033	1096	9.4e-50	168.5	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093623.1
AAGGAGAAGCGGTATTGAGAAAGAAAAGAATAAGAATGAAAACAAGGCAAAGAAAGAGAAAGAGGTATGAGGTGTTGAGAAAGGAAAGAATTAGAATGAAAGGCTGTATACTCTTCAGCTTGCACCACTCGTCCAATTCTATTCCTTTGCTCAATCTCTCTCTCACTCAATTTCTCTCTTTCTCTCTCTAAATTATCAGCACAAAGAATGGAAGGAGAAGCTGCTGCTGCCGCCCTTCAAGCTCTAATTCAAAACCTCAT...

XM_057925701.1
AAGGAGAAGCGGTATTGAGAAAGAAAAGAATAAGAATGAAAACAAGGCAAAGAAAGAGAAAGAGGTATGAGGTGTTGAGAAAGGAAAGAATTAGAATGAAAGGCTGTATACTCTTCAGCTTGCACCACTCGTCCAATTCTATTCCTTTGCTCAATCTCTCTCTCACTCAATTTCTCTCTTTCTCTCTCTAAATTATCAGCACAAAGAATGGAAGGAGAAGCTGCTGCTGCCGCCCTTCAAGCTCTAATTCAAAACCTCAT...

CDS

1 records

下载 CDS FASTA

LOC130999988
ATGGAAGGAGAAGCTGCTGCTGCCGCCCTTCAAGCTCTAATTCAAAACCTCATCGACCTCTCCAAGAAAGAGATCTCTCAAATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTGGCTGCGAGTCTCGACACCATCCAGAAATTCTTGAACGATGCCGAGAAGCGTGACATCACCGGCGAAGCTGTCAAGAACTGGTTGAAGAAGCTTGAAAACGAGGCGTTCGATGCTGACAATGTTTTGAATGAGCTCAACTATCATAT...

Protein

1 records

下载 Protein FASTA

XP_057781684.1
MEGEAAAAALQALIQNLIDLSKKEISQIRGLDKEAAKLAASLDTIQKFLNDAEKRDITGEAVKNWLKKLENEAFDADNVLNELNYHILSKQIKPKKAKVPSCFSCFKHISRSRNMALRIKEINENLESINKEAAELGLVERLANEPTLVNAGFETDSYTLDPIFIGRDDVMSEIVDMLTNSITTDERRVSILAIVGMGGMGKTTLTRKVFNHMKDETRFGSHIWVHVSPNFDPIFLFKKILKELTSYEVEVESKQDILSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器