当前解析结果
SmilChr08G000409| 统一新 Gene ID | SmilChr08G000409 |
|---|---|
| 名称 | SmilChr08G000409 |
| 描述 | phototropin-1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2864715 - 2875246 / - |
| NCBI Gene ID | LOC130999997 |
|---|---|
| GeneID | 130999997 |
| locus_tag | - |
| NCBI Name | LOC130999997 |
| 原始查询 | SmilChr08G000409 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phototropin-1 |
| 产物 | phototropin-1 |
| Arabidopsis | AT3G45780 (PHOT1)phototropin 1 [Source:NCBI gene (formerly Entrezgene);Acc:823721] identity=70.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0101800 (PHOT1A)- identity=68; qcov=0.883; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00989 (PAS); PF07714 (PK_Tyr_Ser-Thr); PF08447 (PAS_3); PF13426 (PAS_9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999997 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781690.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057781690.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057781690.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781690.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781690.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2865138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B140 |
Chr8:2865360 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr8:2865560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B66,B70,B73,C12,C38 |
Chr8:2865592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:2865716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B53,B71 |
Chr8:2865944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:2866096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B61,C78 |
Chr8:2866362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:2866631 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C78 |
Chr8:2866631 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C78 |
Chr8:2866717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C71 |
Chr8:2866786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781690.1PF13426
PAS_9 206-302 aa
PF00989
PAS 208-297 aa
PF08447
PAS_3 212-296 aa
PF13426
PAS_9 493-585 aa
PF00989
PAS 496-585 aa
PF08447
PAS_3 497-582 aa
PF00069
Pkinase 673-958 aa
PF07714
PK_Tyr_Ser-Thr 675-943 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781690.1 |
Pfam | PF13426 |
PAS_9 | Domain | 206 | 302 | 2.7e-43 | 147.2 | PAS domain |
XP_057781690.1 |
Pfam | PF00989 |
PAS | Domain | 208 | 297 | 3.6e-18 | 66.3 | PAS fold |
XP_057781690.1 |
Pfam | PF08447 |
PAS_3 | Domain | 212 | 296 | 1.4e-19 | 70.8 | PAS fold |
XP_057781690.1 |
Pfam | PF13426 |
PAS_9 | Domain | 493 | 585 | 2.7e-43 | 147.2 | PAS domain |
XP_057781690.1 |
Pfam | PF00989 |
PAS | Domain | 496 | 585 | 3.6e-18 | 66.3 | PAS fold |
XP_057781690.1 |
Pfam | PF08447 |
PAS_3 | Domain | 497 | 582 | 1.4e-19 | 70.8 | PAS fold |
XP_057781690.1 |
Pfam | PF00069 |
Pkinase | Domain | 673 | 958 | 6e-63 | 213.4 | Protein kinase domain |
XP_057781690.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 675 | 943 | 2.7e-29 | 103.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。