Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000410`

染色体: Chr08 坐标: 2881587-2884299 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000410`
名称	SmilChr08G000410
描述	probable serine/threonine-protein kinase PBL5
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2881587 - 2884299 / `-`

ID 对照

NCBI Gene ID	`LOC131000001`
GeneID	`131000001`
locus_tag	`-`
NCBI Name	`LOC131000001`
原始查询	`SmilChr08G000410`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase PBL5
产物	probable serine/threonine-protein kinase PBL5
Arabidopsis	`AT1G07870` (AT1G07870) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837302] identity=75; qcov=0.898; evalue=1.37e-152; confidence=high
Rice	`Os07g0695300` (OsRLCK243) - identity=79.2; qcov=0.855; evalue=1.81e-154; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131000001

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781701.1`
2	Cytosol	细胞质基质	0.40000	`XP_057781702.1`
3	Nucleus	细胞核	0.00000	`XP_057781701.1`
4	Chromosome	染色体	0.00000	`XP_057781701.1`
5	Centromere	着丝粒	0.00000	`XP_057781701.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2881915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B14,B45,B49,C12
`Chr8:2882018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B70,B73,C12
`Chr8:2882062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr8:2882091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,B20
`Chr8:2882401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,C76
`Chr8:2882422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:2882440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B24,B78
`Chr8:2882464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,B53,B71
`Chr8:2882482`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B52,B91,C20
`Chr8:2882578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B87,C60
`Chr8:2882602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B87,C60
`Chr8:2882607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,B74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781701.1

397 aa

198

397

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 92-361 aa PF07714 PK_Tyr_Ser-Thr 95-363 aa

XP_057781702.1

303 aa

152

303

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 18-267 aa PF07714 PK_Tyr_Ser-Thr 19-269 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781701.1`	Pfam	`PF00069`	Pkinase	Domain	92	361	2e-42	146.2	Protein kinase domain
`XP_057781701.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	95	363	1.8e-43	149.5	Protein tyrosine and serine/threonine kinase
`XP_057781702.1`	Pfam	`PF00069`	Pkinase	Domain	18	267	4.9e-36	125.2	Protein kinase domain
`XP_057781702.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	19	269	4.5e-39	135.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925718.1
TATTTGAAGTAGAAATCTGCATAGAACAGAGCAAAATTTTCCTCTTTTCTCTCTCTCTTCTTTCTCTTTCTGCAAACCTTTCTTCTATTTTGTAATTATTTTTCTTTCCCTGTTCTCCGTTATTTGCAGCTGAGAAATAAAAGAAATATATATATTTAGAGAGAGGGGAGAAAGAGGGAGGAGAGAGAGAGAGGGAGGAGGAGGAAGCTAGGCATGGGGTGTTTCTCGTGCGCAGGTGATTCCTCTGCTCACAAGAAACA...

XM_057925719.1
ACCACTCGCAGGCGAGCTCATATAGGTCTACGAAAGAGCCTAAACTAGTGTCTCAATCCACAAATTCTAGCTTGAGTTCTACCTGTGGTTCGGAAAGTGAAGCCTTCCAAGCGAGGAAATTCGCCCTAGCTGAGTTAGTTGCTGCAACGGAGAATTTCAAGGATGGAAATTTTATCGGTGAAGGAGGATTTGGACAAGTTTACAAAGGTCGTTTACCGGATGATTGTGGCCATCAAGCAACTAGATCGCAACGGCTCTCA...

CDS

2 records

下载 CDS FASTA

LOC131000001
ATGGGGTGTTTCTCGTGCGCAGGTGATTCCTCTGCTCACAAGAAACAACATAAAAAGAAAAAGATGGCCCTCGACAATAAACGAAGAGATGATGGTCATGCACGAACCCCATCGGACCACTCGCAGGCGAGCTCATATAGGTCTACGAAAGAGCCTAAACTAGTGTCTCAATCCACAAATTCTAGCTTGAGTTCTACCTGTGGTTCGGAAAGTGAAGCCTTCCAAGCGAGGAAATTCGCCCTAGCTGAGTTAGTTGCTGC...

LOC131000001
ATGGAAATTTTATCGGTGAAGGAGGATTTGGACAAGTTTACAAAGGTCGTTTACCGGATGATTGTGGCCATCAAGCAACTAGATCGCAACGGCTCTCAAGGAATTAGGGAATTCGTGGCTGAAGTCTTAACATTAAGTAATGCAGAGCACCCTAATCTTGTCAAATTAATAGGCTATTGTGCTGAGGGAGATCAGAGGTTGTTAGTCTATGAATATATGCCACTAGGTTCTTTGGAGGACCTTTTACATGACATTTACCC...

Protein

2 records

下载 Protein FASTA

XP_057781701.1
MGCFSCAGDSSAHKKQHKKKKMALDNKRRDDGHARTPSDHSQASSYRSTKEPKLVSQSTNSSLSSTCGSESEAFQARKFALAELVAATENFKDGNFIGEGGFGQVYKGRLPDGEIVAIKQLDRNGSQGIREFVAEVLTLSNAEHPNLVKLIGYCAEGDQRLLVYEYMPLGSLEDLLHDIYPGSKVLDWNARMKMASGAAEGLEYLHTKMSPPIIYRDLKCSNILLGEGYHPKLSDFGLAKEGPCGDETHVSTRVMGTYGY...

XP_057781702.1
MEILSVKEDLDKFTKVVYRMIVAIKQLDRNGSQGIREFVAEVLTLSNAEHPNLVKLIGYCAEGDQRLLVYEYMPLGSLEDLLHDIYPGSKVLDWNARMKMASGAAEGLEYLHTKMSPPIIYRDLKCSNILLGEGYHPKLSDFGLAKEGPCGDETHVSTRVMGTYGYCAPDYAMTGQLNFKSDIYSFGVVLLEILTGRRAIDYTRSGPEQNLVDWARPLFKDRKKFHEMADPALEGRYPVRGLYQALAIAAMCIQEQPNIR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器