Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000411`

染色体: Chr08 坐标: 2904953-2910765 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000411`
名称	SmilChr08G000411
描述	DNA repair protein RAD51 homolog 2
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2904953 - 2910765 / `+`

ID 对照

NCBI Gene ID	`LOC131000002`
GeneID	`131000002`
locus_tag	`-`
NCBI Name	`LOC131000002`
原始查询	`SmilChr08G000411`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA repair protein RAD51 homolog 2
产物	DNA repair protein RAD51 homolog 2
Arabidopsis	`AT2G28560` (RAD51B) DNA repair (Rad51) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817404] identity=65; qcov=1; evalue=3.59e-179; confidence=high
Rice	`Os05g0121700` (OsRAD51B) - identity=58; qcov=0.995; evalue=2.6e-146; confidence=high
GO	GO:0000400 (four-way junction DNA binding); GO:0000724 (double-strand break repair via homologous recombination); GO:0003690 (double-stranded DNA binding); GO:0003697 (single-stranded DNA binding); GO:0005524 (ATP binding); GO:0005657 (replication fork); GO:0016887 (ATP hydrolysis activity); GO:0033063 (Rad51B-Rad51C-Rad51D-XRCC2 complex); GO:0140664 (ATP-dependent DNA damage sensor activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF06745 (ATPase); PF08423 (Rad51); PF13481 (AAA_25); PF26169 (HHH_XRCC3_RpoA)
InterPro	-
eggNOG	-
NR	GeneID:131000002

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781703.1`
2	Nucleoplasm	核质	0.60000	`XP_057781703.1`
3	Cytoplasm	细胞质	0.60000	`XP_057781703.1`
4	Cytosol	细胞质基质	0.20000	`XP_057781703.1`
5	Chromosome	染色体	0.00000	`XP_057781703.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2905034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C25
`Chr8:2905059`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr8:2905102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,A6,B123,C71
`Chr8:2905103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr8:2905104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:2905414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr8:2905873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B14,B45,B49,C12
`Chr8:2905899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:2905900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,C25
`Chr8:2907080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:2907081`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B38,B39,C19
`Chr8:2907939`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781703.1

366 aa

183

366

HHH_XRCC3_RpoA

Rad51

ATPase

AAA_25

PF26169 HHH_XRCC3_RpoA 6-59 aa PF08423 Rad51 84-333 aa PF06745 ATPase 85-218 aa PF13481 AAA_25 97-219 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781703.1`	Pfam	`PF26169`	HHH_XRCC3_RpoA	Domain	6	59	7.3e-19	68.1	XRCC3/RpoA-like, helix-hairpin-helix domain
`XP_057781703.1`	Pfam	`PF08423`	Rad51	Domain	84	333	4.8e-27	95.5	Rad51
`XP_057781703.1`	Pfam	`PF06745`	ATPase	Domain	85	218	7.1e-07	29.5	KaiC
`XP_057781703.1`	Pfam	`PF13481`	AAA_25	Domain	97	219	2.2e-06	28.2	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093629.1
GAAACAGAAACAGAGAAAAGAAAAAATACTTATATATATTAACCAGAAACAAATTTAGCGAGCTTCTTCGAAAATGGCGAACAAGCTAATCAGCGAGATGGGGCTCCCCAAATCGATAGCTAACGTATTTTCCGCTCGGAATATCCTCACCGCCAAGGATGCATTGTCACTAAGTGAATTCGAGTTAATGGAGTTGATGGATGTTGGATTGGAAGAGGTTATGACGGCAGTGGCACGCATTAGTGAAATTGCGTGCCCGC...

XR_009093630.1
GAAACAGAAACAGAGAAAAGAAAAAATACTTATATATATTAACCAGAAACAAATTTAGCGAGCTTCTTCGAAAATGGCGAACAAGCTAATCAGCGAGATGGGGCTCCCCAAATCGATAGCTAACGTATTTTCCGCTCGGAATATCCTCACCGCCAAGGATGCATTGTCACTAAGTGAATTCGAGTTAATGGAGTTGATGGATGTTGGATTGGAAGAGGTTATGACGGCAGTGGCACGCATTAGTGAAATTGCGTGCCCGC...

CDS

1 records

下载 CDS FASTA

LOC131000002
ATGGCGAACAAGCTAATCAGCGAGATGGGGCTCCCCAAATCGATAGCTAACGTATTTTCCGCTCGGAATATCCTCACCGCCAAGGATGCATTGTCACTAAGTGAATTCGAGTTAATGGAGTTGATGGATGTTGGATTGGAAGAGGTTATGACGGCAGTGGCACGCATTAGTGAAATTGCGTGCCCGCCCTATCAAACTGCTTTGTCGTTGCTGGAGCAGCGAAGACAAAATGAGCATCTAGCTGGTCATCTCCCCACTGG...

Protein

1 records

下载 Protein FASTA

XP_057781703.1
MANKLISEMGLPKSIANVFSARNILTAKDALSLSEFELMELMDVGLEEVMTAVARISEIACPPYQTALSLLEQRRQNEHLAGHLPTGLKGLDAALCGGIPFGVVTELVGPAGIGKTQLCLKLALLASLPTSHGGLGGQVIYIDVESKFSSRRIIEMGLSSFPEIFNMEGMAQEMAGRILVLQPASLSEFTESLQKIKVSLLQNDVKLLIIDSMTALASGEYGQGPPRLGWHFSFIKSLAECCRIPVVVTNQVRSQVRDEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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