当前解析结果
SmilChr08G000419| 统一新 Gene ID | SmilChr08G000419 |
|---|---|
| 名称 | SmilChr08G000419 |
| 描述 | disease resistance-like protein DSC2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2983908 - 2985474 / + |
| NCBI Gene ID | LOC131000010 |
|---|---|
| GeneID | 131000010 |
| locus_tag | - |
| NCBI Name | LOC131000010 |
| 原始查询 | SmilChr08G000419 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance-like protein DSC2 |
| 产物 | disease resistance-like protein DSC2 |
| Arabidopsis | AT1G69550 (AT1G69550)disease resistance protein (TIR-NBS-LRR class) [Source:NCBI gene (formerly Entrezgene);Acc:843291] identity=27.8; qcov=0.992; evalue=6.23e-15; confidence=low |
| Rice | Os04g0378575- identity=29.3; qcov=0.726; evalue=5.7e-22; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF23247 (LRR_RPS2); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000010 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781719.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057781719.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057781719.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781719.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781719.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2983922 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | C33 |
Chr8:2983922 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | C33 |
Chr8:2983923 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B1 |
Chr8:2983923 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B1 |
Chr8:2983924 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | C33 |
Chr8:2983924 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | C33 |
Chr8:2983925 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B1 |
Chr8:2983925 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B1 |
Chr8:2983933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,D3 |
Chr8:2983935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr8:2983967 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr8:2983985 |
T |
TC |
1bp_insertion | frameshift_variant | 6 | B58,C16,C33,C42,C51,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781719.1PF23247
LRR_RPS2 82-199 aa
PF25019
LRR_R13L1-DRL21 368-425 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781719.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 82 | 199 | 8.9e-18 | 65.5 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057781719.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 368 | 425 | 1.3e-22 | 80.7 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。