当前解析结果
SmilChr08G000420| 统一新 Gene ID | SmilChr08G000420 |
|---|---|
| 名称 | SmilChr08G000420 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2991282 - 3002412 / + |
| NCBI Gene ID | LOC130997132 |
|---|---|
| GeneID | 130997132 |
| locus_tag | - |
| NCBI Name | LOC130997132 |
| 原始查询 | SmilChr08G000420 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.7; qcov=0.93; evalue=1.55e-113; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=31.9; qcov=1.07; evalue=3.86e-138; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057778376.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057778376.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778376.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778376.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778376.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2991303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr8:2991306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr8:2991327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B17,C32,C68 |
Chr8:2991344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B55,C34,C75 |
Chr8:2991372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C60 |
Chr8:2991399 |
GCA |
G |
2bp_deletion | frameshift_variant | 4 | A1,B41,C43,C61 |
Chr8:2991399 |
GCA |
G |
2bp_deletion | CDS_variant | 4 | A1,B41,C43,C61 |
Chr8:2991431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr8:2991440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,A19,C1 |
Chr8:2991446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B14 |
Chr8:2991452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr8:2991488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778376.1PF18052
Rx_N 11-98 aa
PF00931
NB-ARC 182-292 aa
PF23559
WHD_DRP 396-467 aa
PF23598
LRR_14 505-791 aa
PF25019
LRR_R13L1-DRL21 631-759 aa
PF23247
LRR_RPS2 700-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778376.1 |
Pfam | PF18052 |
Rx_N | Domain | 11 | 98 | 8.2e-21 | 74.6 | Rx N-terminal domain |
XP_057778376.1 |
Pfam | PF00931 |
NB-ARC | Domain | 182 | 292 | 1.4e-20 | 74.3 | NB-ARC domain |
XP_057778376.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 396 | 467 | 4.6e-25 | 88.2 | Disease resistance protein Winged helix domain |
XP_057778376.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 505 | 791 | 9.9e-48 | 163.4 | Leucine-rich repeat region |
XP_057778376.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 631 | 759 | 4.1e-48 | 163.2 | R13L1/DRL21 LRRs |
XP_057778376.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 700 | 841 | 2.8e-11 | 44.4 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。