当前解析结果
SmilChr08G000421| 统一新 Gene ID | SmilChr08G000421 |
|---|---|
| 名称 | SmilChr08G000421 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3006469 - 3010515 / + |
| NCBI Gene ID | LOC131000009 |
|---|---|
| GeneID | 131000009 |
| locus_tag | - |
| NCBI Name | LOC131000009 |
| 原始查询 | SmilChr08G000421 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=32.2; qcov=0.891; evalue=1.78e-122; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.6; qcov=1.04; evalue=1.43e-147; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000009 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781718.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057781718.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781718.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781718.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781718.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3006589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B7,C55,D5 |
Chr8:3006595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C75 |
Chr8:3006597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:3006601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B140,B39,B7,C55,D5 |
Chr8:3006635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B119,B140,B39,B7 |
Chr8:3006638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B69,C50,C62 |
Chr8:3006647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr8:3006713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B71 |
Chr8:3006714 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B140,B39,B63,B7 |
Chr8:3006714 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B140,B39,B63,B7 |
Chr8:3006721 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B140,B39,B7 |
Chr8:3006721 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B140,B39,B7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781718.1PF18052
Rx_N 9-97 aa
PF00931
NB-ARC 175-343 aa
PF13401
AAA_22 191-277 aa
PF23559
WHD_DRP 425-496 aa
PF23598
LRR_14 534-870 aa
PF25019
LRR_R13L1-DRL21 660-787 aa
PF23247
LRR_RPS2 730-875 aa
PF25019
LRR_R13L1-DRL21 1030-1099 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781718.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 97 | 7.2e-21 | 74.8 | Rx N-terminal domain |
XP_057781718.1 |
Pfam | PF00931 |
NB-ARC | Domain | 175 | 343 | 3.9e-33 | 115.2 | NB-ARC domain |
XP_057781718.1 |
Pfam | PF13401 |
AAA_22 | Domain | 191 | 277 | 1.1e-06 | 29.7 | AAA domain |
XP_057781718.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 425 | 496 | 8.4e-24 | 84.1 | Disease resistance protein Winged helix domain |
XP_057781718.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 534 | 870 | 6.5e-46 | 157.4 | Leucine-rich repeat region |
XP_057781718.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 660 | 787 | 2.1e-49 | 167.3 | R13L1/DRL21 LRRs |
XP_057781718.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 730 | 875 | 2.2e-10 | 41.5 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057781718.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 1030 | 1099 | 2.1e-49 | 167.3 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。