当前解析结果
SmilChr08G000432| 统一新 Gene ID | SmilChr08G000432 |
|---|---|
| 名称 | SmilChr08G000432 |
| 描述 | uncharacterized SmilChr08G000432 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3100874 - 3102069 / + |
| NCBI Gene ID | LOC130997134 |
|---|---|
| GeneID | 130997134 |
| locus_tag | - |
| NCBI Name | LOC130997134 |
| 原始查询 | SmilChr08G000432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108]; symbol=AT3G09510; hit=AT3G09510; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G09510 (AT3G09510)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820108] identity=26.1; qcov=0.703; evalue=2.49e-11; confidence=low |
| Rice | Os02g0118800- identity=26.2; qcov=0.675; evalue=6.16e-09; confidence=low |
| GO | GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation) |
| KEGG | - |
| Pfam | PF01020 (Ribosomal_L40e); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997134 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057778378.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057778378.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057778378.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057778378.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778378.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3100922 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,D10 |
Chr8:3100960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,D10 |
Chr8:3100980 |
CTG |
C |
2bp_deletion | frameshift_variant | 8 | A14,A16,B35,B46,B59,C55,C61,C68 |
Chr8:3101016 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B137 |
Chr8:3101016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr8:3101030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,A7 |
Chr8:3101044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B47,C16,C65 |
Chr8:3101054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B79,C18,C37,C62 |
Chr8:3101076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,C31,D1 |
Chr8:3101095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B42,B43,D10 |
Chr8:3101111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C43,D11 |
Chr8:3101179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778378.1PF13966
zf-RVT 56-150 aa
PF01020
Ribosomal_L40e 255-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778378.1 |
Pfam | PF13966 |
zf-RVT | Domain | 56 | 150 | 7.3e-16 | 59.3 | zinc-binding in reverse transcriptase |
XP_057778378.1 |
Pfam | PF01020 |
Ribosomal_L40e | Domain | 255 | 282 | 3e-09 | 37.4 | Ribosomal L40e family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。