Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000433`

染色体: Chr08 坐标: 3105187-3110887 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000433`
名称	SmilChr08G000433
描述	putative disease resistance protein RGA4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3105187 - 3110887 / `+`

ID 对照

NCBI Gene ID	`LOC131000021`
GeneID	`131000021`
locus_tag	`-`
NCBI Name	`LOC131000021`
原始查询	`SmilChr08G000433`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA4
产物	putative disease resistance protein RGA4
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.3; qcov=0.881; evalue=8.68e-118; confidence=low
Rice	`Os05g0492200` (YR1) - identity=31.2; qcov=1.04; evalue=2.71e-138; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:131000021

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781733.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781733.1`
3	Nucleus	细胞核	0.00000	`XP_057781733.1`
4	Chromosome	染色体	0.00000	`XP_057781733.1`
5	Centromere	着丝粒	0.00000	`XP_057781733.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3105355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B11,B16,B84,B92
`Chr8:3105408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B19,B86,C55
`Chr8:3105414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:3105417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:3105424`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	B60
`Chr8:3105424`	`G`	`GAA`	2bp_insertion	CDS_variant	1	B60
`Chr8:3105427`	`A`	`ATG`	2bp_insertion	frameshift_variant	1	B60
`Chr8:3105427`	`A`	`ATG`	2bp_insertion	CDS_variant	1	B60
`Chr8:3105465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B56,C19
`Chr8:3105472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B56,C19,D7
`Chr8:3105480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr8:3105504`	`TGA`	`T`	2bp_deletion	frameshift_variant	2	B128,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781733.1

1158 aa

579

1158

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 174-340 aa PF23559 WHD_DRP 424-495 aa PF23598 LRR_14 541-858 aa PF25019 LRR_R13L1-DRL21 662-789 aa PF23247 LRR_RPS2 745-873 aa

XP_057781734.1

1158 aa

579

1158

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 174-340 aa PF23559 WHD_DRP 424-495 aa PF23598 LRR_14 541-858 aa PF25019 LRR_R13L1-DRL21 662-789 aa PF23247 LRR_RPS2 745-873 aa

XP_057781735.1

1156 aa

578

1156

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 174-340 aa PF23559 WHD_DRP 424-495 aa PF23598 LRR_14 541-858 aa PF25019 LRR_R13L1-DRL21 662-789 aa PF23247 LRR_RPS2 745-873 aa

XP_057781736.1

1156 aa

578

1156

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 9-97 aa PF00931 NB-ARC 174-340 aa PF23559 WHD_DRP 424-495 aa PF23598 LRR_14 541-858 aa PF25019 LRR_R13L1-DRL21 662-789 aa PF23247 LRR_RPS2 745-873 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781733.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	7.2e-20	71.6	Rx N-terminal domain
`XP_057781733.1`	Pfam	`PF00931`	NB-ARC	Domain	174	340	2.6e-31	109.2	NB-ARC domain
`XP_057781733.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	495	2.5e-23	82.6	Disease resistance protein Winged helix domain
`XP_057781733.1`	Pfam	`PF23598`	LRR_14	Repeat	541	858	1.6e-41	142.9	Leucine-rich repeat region
`XP_057781733.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	662	789	5.1e-50	169.3	R13L1/DRL21 LRRs
`XP_057781733.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	745	873	7.1e-15	56.0	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781734.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	7.2e-20	71.6	Rx N-terminal domain
`XP_057781734.1`	Pfam	`PF00931`	NB-ARC	Domain	174	340	2.6e-31	109.2	NB-ARC domain
`XP_057781734.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	495	2.5e-23	82.6	Disease resistance protein Winged helix domain
`XP_057781734.1`	Pfam	`PF23598`	LRR_14	Repeat	541	858	1.6e-41	142.9	Leucine-rich repeat region
`XP_057781734.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	662	789	5.1e-50	169.3	R13L1/DRL21 LRRs
`XP_057781734.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	745	873	7.1e-15	56.0	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781735.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	7.1e-20	71.6	Rx N-terminal domain
`XP_057781735.1`	Pfam	`PF00931`	NB-ARC	Domain	174	340	2.6e-31	109.2	NB-ARC domain
`XP_057781735.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	495	2.5e-23	82.6	Disease resistance protein Winged helix domain
`XP_057781735.1`	Pfam	`PF23598`	LRR_14	Repeat	541	858	1.5e-41	143.1	Leucine-rich repeat region
`XP_057781735.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	662	789	5e-50	169.4	R13L1/DRL21 LRRs
`XP_057781735.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	745	873	7.4e-15	56.0	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781736.1`	Pfam	`PF18052`	Rx_N	Domain	9	97	7.1e-20	71.6	Rx N-terminal domain
`XP_057781736.1`	Pfam	`PF00931`	NB-ARC	Domain	174	340	2.6e-31	109.2	NB-ARC domain
`XP_057781736.1`	Pfam	`PF23559`	WHD_DRP	Domain	424	495	2.5e-23	82.6	Disease resistance protein Winged helix domain
`XP_057781736.1`	Pfam	`PF23598`	LRR_14	Repeat	541	858	1.5e-41	143.1	Leucine-rich repeat region
`XP_057781736.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	662	789	5e-50	169.4	R13L1/DRL21 LRRs
`XP_057781736.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	745	873	7.4e-15	56.0	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925753.1
TCACCCAATTCTATTCCTTAGCTTTCTCTCTCTCACTCAATTTCTCTTTCTCTCTCTAAGTTATCCGCACAAAGAATGGAAGAAGCTGCTGCTGCCGCCGTCCTTCGAGCTTCAATTCAAAACCTGATCGACTTTTGCAAGAATGAGATCTCTCAAATCCAAGGTGTCGACGAAGAAGCAGCAAAGCTAGCTGGGACTCTCGAAATCATGCAGAAGTTCTTGAACCACGCGGAGTCGGGCACCATCACCGGCGAAGATGT...

XM_057925750.1
CACCCAATTCTATTCCTTAGCTTTCTCTCTCTCACTCAATTTCTCTTTCTCTCTCTAAGTTATCCGCACAAAGAATGGAAGAAGCTGCTGCTGCCGCCGTCCTTCGAGCTTCAATTCAAAACCTGATCGACTTTTGCAAGAATGAGATCTCTCAAATCCAAGGTGTCGACGAAGAAGCAGCAAAGCTAGCTGGGACTCTCGAAATCATGCAGAAGTTCTTGAACCACGCGGAGTCGGGCACCATCACCGGCGAAGATGTC...

CDS

4 records

下载 CDS FASTA

LOC131000021
ATGGAAGAAGCTGCTGCTGCCGCCGTCCTTCGAGCTTCAATTCAAAACCTGATCGACTTTTGCAAGAATGAGATCTCTCAAATCCAAGGTGTCGACGAAGAAGCAGCAAAGCTAGCTGGGACTCTCGAAATCATGCAGAAGTTCTTGAACCACGCGGAGTCGGGCACCATCACCGGCGAAGATGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCGATGCTGACAATGTTTTGGATGAAATCAACTATCATAT...

Protein

4 records

下载 Protein FASTA

XP_057781733.1
MEEAAAAAVLRASIQNLIDFCKNEISQIQGVDEEAAKLAGTLEIMQKFLNHAESGTITGEDVKSWLKKLEDVAFDADNVLDEINYHILYKQIKPKKAKVLSFFNHIPRSRKMALKIKKMRENLDCINKDAAVLGLKERLAAAVPTLLDADASETDSYAVDPIFIGRDDVVSEIVEMLTNSITTDERRVSILPIVGMGGLGKSALTRKVFNHEMVKSRFESHIWVHVSPNFEPITLLKKILNNLTSHQVENASRQVVLTKL...

XP_057781734.1
MEEAAAAAVLRASIQNLIDFCKNEISQIQGVDEEAAKLAGTLEIMQKFLNHAESGTITGEDVKSWLKKLEDVAFDADNVLDEINYHILYKQIKPKKAKVLSFFNHIPRSRKMALKIKKMRENLDCINKDAAVLGLKERLAAAVPTLLDADASETDSYAVDPIFIGRDDVVSEIVEMLTNSITTDERRVSILPIVGMGGLGKSALTRKVFNHEMVKSRFESHIWVHVSPNFEPITLLKKILNNLTSHQVENASRQVVLTKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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