当前解析结果
SmilChr08G000442| 统一新 Gene ID | SmilChr08G000442 |
|---|---|
| 名称 | SmilChr08G000442 |
| 描述 | E3 ubiquitin-protein ligase RSL1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3160309 - 3163033 / - |
| NCBI Gene ID | LOC131000027 |
|---|---|
| GeneID | 131000027 |
| locus_tag | - |
| NCBI Name | LOC131000027 |
| 原始查询 | SmilChr08G000442 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase RSL1-like |
| 产物 | E3 ubiquitin-protein ligase RSL1-like |
| Arabidopsis | AT5G60250 (AT5G60250)zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:836147] identity=35.8; qcov=1.07; evalue=9.35e-101; confidence=medium |
| Rice | Os12g0631200- identity=32.9; qcov=0.754; evalue=1.42e-49; confidence=low |
| GO | GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF01485 (IBR); PF13456 (RVT_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781746.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057781746.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057781746.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781746.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781746.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3160652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B101,B48,C16 |
Chr8:3160658 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr8:3160680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,A24,B94 |
Chr8:3161246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B24,B4,B85 |
Chr8:3161355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,B81,D10 |
Chr8:3161424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B129,C53 |
Chr8:3161448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B101,B48,C16 |
Chr8:3161558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B101,B48,C16 |
Chr8:3161602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A6,B8,C17,C4,C71 |
Chr8:3161660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:3161714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B74 |
Chr8:3161761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,A22,B112,B73,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781746.1PF13456
RVT_3 140-254 aa
PF00097
zf-C3HC4 275-319 aa
PF01485
IBR 356-414 aa
PF01485
IBR 430-482 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781746.1 |
Pfam | PF13456 |
RVT_3 | Domain | 140 | 254 | 2.2e-15 | 57.4 | Reverse transcriptase-like |
XP_057781746.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 275 | 319 | 5.3e-05 | 23.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057781746.1 |
Pfam | PF01485 |
IBR | Domain | 356 | 414 | 2.1e-15 | 57.2 | IBR domain, a half RING-finger domain |
XP_057781746.1 |
Pfam | PF01485 |
IBR | Domain | 430 | 482 | 2.1e-15 | 57.2 | IBR domain, a half RING-finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。