Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000453`

染色体: Chr08 坐标: 3216236-3222129 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000453`
名称	SmilChr08G000453
描述	auxin response factor 4-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3216236 - 3222129 / `-`

ID 对照

NCBI Gene ID	`LOC131000042`
GeneID	`131000042`
locus_tag	`-`
NCBI Name	`LOC131000042`
原始查询	`SmilChr08G000453`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin response factor 4-like
产物	auxin response factor 4-like
Arabidopsis	`AT5G60450` (ARF4) auxin response factor 4 [Source:NCBI gene (formerly Entrezgene);Acc:836166] identity=58.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0670800` (OsARF2) - identity=39.3; qcov=0.962; evalue=8.5e-143; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009725 (response to hormone)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02362 (B3); PF06507 (ARF_AD)
InterPro	-
eggNOG	-
NR	GeneID:131000042

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781770.1`
2	Chromosome	染色体	0.00000	`XP_057781770.1`
3	Centromere	着丝粒	0.00000	`XP_057781770.1`
4	Chromatin	染色质	0.00000	`XP_057781770.1`
5	Telomere	端粒	0.00000	`XP_057781770.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3216537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B93
`Chr8:3216552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:3216561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A25,B117,C26
`Chr8:3216579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:3216594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr8:3216654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C19
`Chr8:3216828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr8:3217061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B9,C32,C68,C78
`Chr8:3217085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B38
`Chr8:3217100`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:3217121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr8:3217179`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781770.1

814 aa

407

814

ARF_AD

PF02362 B3 185-286 aa PF06507 ARF_AD 334-415 aa

XP_057781771.1

783 aa

392

783

ARF_AD

PF02362 B3 185-286 aa PF06507 ARF_AD 334-415 aa

XP_057781772.1

777 aa

388

777

ARF_AD

PF02362 B3 148-249 aa PF06507 ARF_AD 297-378 aa

XP_057781773.1

769 aa

384

769

ARF_AD

PF02362 B3 140-241 aa PF06507 ARF_AD 289-370 aa

XP_057781774.1

746 aa

373

746

ARF_AD

PF02362 B3 148-249 aa PF06507 ARF_AD 297-378 aa

XP_057781775.1

738 aa

369

738

ARF_AD

PF02362 B3 140-241 aa PF06507 ARF_AD 289-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781770.1`	Pfam	`PF02362`	B3	Domain	185	286	6.5e-23	81.3	B3 DNA binding domain
`XP_057781770.1`	Pfam	`PF06507`	ARF_AD	Domain	334	415	5.2e-33	113.5	Auxin response factor ancillary domain
`XP_057781771.1`	Pfam	`PF02362`	B3	Domain	185	286	6.1e-23	81.4	B3 DNA binding domain
`XP_057781771.1`	Pfam	`PF06507`	ARF_AD	Domain	334	415	4.9e-33	113.6	Auxin response factor ancillary domain
`XP_057781772.1`	Pfam	`PF02362`	B3	Domain	148	249	6e-23	81.4	B3 DNA binding domain
`XP_057781772.1`	Pfam	`PF06507`	ARF_AD	Domain	297	378	4.9e-33	113.6	Auxin response factor ancillary domain
`XP_057781773.1`	Pfam	`PF02362`	B3	Domain	140	241	5.9e-23	81.4	B3 DNA binding domain
`XP_057781773.1`	Pfam	`PF06507`	ARF_AD	Domain	289	370	4.8e-33	113.6	Auxin response factor ancillary domain
`XP_057781774.1`	Pfam	`PF02362`	B3	Domain	148	249	5.6e-23	81.5	B3 DNA binding domain
`XP_057781774.1`	Pfam	`PF06507`	ARF_AD	Domain	297	378	4.6e-33	113.7	Auxin response factor ancillary domain
`XP_057781775.1`	Pfam	`PF02362`	B3	Domain	140	241	5.5e-23	81.5	B3 DNA binding domain
`XP_057781775.1`	Pfam	`PF06507`	ARF_AD	Domain	289	370	4.5e-33	113.7	Auxin response factor ancillary domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057925790.1
TTGCATTCAATGGAAAACCTCCTTTTTTTTGGTGCTGGTGGTGACGGGAGGAAGGGGGCCTCAAGCTAAAAGTGATAAAGAAAATTTGATAATCAACAAAAAGAAACATCTTAATGTTGATAATTTTTTCTTTTTTCACACTGAAAAATCACAAAAGCTAATGCAAAGCAAACCAAGAAAGGAGTGGGGTTAGGCTTTGGCTGTGGGTTCTTCTGTACTGTCTTAGCTTGTCCCCTCCACTTAACACATGAGTGAGGTGG...

XM_057925789.1
ATGGAAAACCTCCTTTTTTTTGGTGCTGGTGGTGACGGGAGGAAGGGGGCCTCAAGCTAAAAGTGATAAAGAAAATTTGATAATCAACAAAAAGAAACATCTTAATGTTGATAATTTTTTCTTTTTTCACACTGAAAAATCACAAAAGCTAATGCAAAGCAAACCAAGAAAGGAGTGGGGTTAGGCTTTGGCTGTGGGTTCTTCTGTACTGTCTTAGCTTGTCCCCTCCACTTAACACAGTTCTCTCTCTTGCTCTCTCT...

CDS

6 records

下载 CDS FASTA

LOC131000042
ATGAGTGAGGTGGAGAAGAATAATGCATGTGTGAATGGAGGAGAATGTGAAGAATCTGCTCCACCACCATCGATATATGTGGAGCTCTGGCATGCTTGTGCTGGACCTCTCACCAGCTTGCCCAAGAAAGGAAATGTGGTGGTGTATTTCCCTCAAGGCCACATGGAGCAGGCTGCCTCTGCCTCACCCTTTCCTCCCATGGATATGCCCACTTTTGATCTTCCTCCACAGATCTTTTGCCGGGTTATCGATGTTCGGTT...

Protein

6 records

下载 Protein FASTA

XP_057781770.1
MEFDLNDAVSEVEKNNACVNGGECEGGSGDYGCLQTSISLPPSSSAASHSSSSSSSCSSPCSESAPPPSIYVELWHACAGPLTSLPKKGNVVVYFPQGHMEQAASASPFPPMDMPTFDLPPQIFCRVIDVRLLANKENDEVYTQLNLLPLPELAGVKLDGKESENAGVDEDGNGVMPAKSTSHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKEQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQ...

XP_057781771.1
MEFDLNDAVSEVEKNNACVNGGECEGGSGDYGCLQTSISLPPSSSAASHSSSSSSSCSSPCSESAPPPSIYVELWHACAGPLTSLPKKGNVVVYFPQGHMEQAASASPFPPMDMPTFDLPPQIFCRVIDVRLLANKENDEVYTQLNLLPLPELAGVKLDGKESENAGVDEDGNGVMPAKSTSHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKEQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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