当前解析结果
SmilChr08G000457| 统一新 Gene ID | SmilChr08G000457 |
|---|---|
| 名称 | SmilChr08G000457 |
| 描述 | zinc finger protein BALDIBIS-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3280803 - 3282738 / + |
| NCBI Gene ID | LOC131000047 |
|---|---|
| GeneID | 131000047 |
| locus_tag | - |
| NCBI Name | LOC131000047 |
| 原始查询 | SmilChr08G000457 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein BALDIBIS-like |
| 产物 | zinc finger protein BALDIBIS-like |
| Arabidopsis | AT3G45260 (AT3G45260)C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:823664] identity=53.4; qcov=1; evalue=1.06e-116; confidence=high |
| Rice | Os01g0242200 (OsIDD8)- identity=55.6; qcov=0.857; evalue=2.77e-115; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000047 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781781.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781781.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781781.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781781.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3281284 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr8:3281547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B68 |
Chr8:3281724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B62,C18,C33,C55 |
Chr8:3281821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:3281825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B108,B46,B56,B96,D7 |
Chr8:3282022 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr8:3282029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B105,C46 |
Chr8:3282110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr8:3282118 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B100 |
Chr8:3282118 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B100 |
Chr8:3282125 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B62,C18,C55 |
Chr8:3282131 |
G |
GAT |
2bp_insertion | stop_gained,frameshift_variant | 1 | B93 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781781.1PF22996
C2H2-2nd_BIRD-IDD 106-140 aa
PF22995
C2CH-3rd_BIRD-IDD 144-168 aa
PF22992
C2CH-4th_BIRD-IDD 171-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781781.1 |
Pfam | PF22996 |
C2H2-2nd_BIRD-IDD | Family | 106 | 140 | 2.1e-20 | 73.2 | BIRD-IDD transcription factor, second C2H2 zinc finger |
XP_057781781.1 |
Pfam | PF22995 |
C2CH-3rd_BIRD-IDD | Domain | 144 | 168 | 6.3e-15 | 55.3 | BIRD-IDD transcription factor, third C2HC zinc finger |
XP_057781781.1 |
Pfam | PF22992 |
C2CH-4th_BIRD-IDD | Domain | 171 | 207 | 1.4e-23 | 83.1 | BIRD-IDD transcription factor, fourth C2HC zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。