Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000459`

染色体: Chr08 坐标: 3291131-3296298 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000459`
名称	SmilChr08G000459
描述	beta-galactosidase 8
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3291131 - 3296298 / `+`

ID 对照

NCBI Gene ID	`LOC131000049`
GeneID	`131000049`
locus_tag	`-`
NCBI Name	`LOC131000049`
原始查询	`SmilChr08G000459`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-galactosidase 8
产物	beta-galactosidase 8
Arabidopsis	`AT2G28470` (BGAL8) beta-galactosidase 8 [Source:NCBI gene (formerly Entrezgene);Acc:817395] identity=68.3; qcov=0.97; evalue=0; confidence=high
Rice	`Os03g0255100` (OsBgal8) - identity=64; qcov=0.977; evalue=0; confidence=high
GO	GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF01301 (Glyco_hydro_35); PF02140 (SUEL_Lectin); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd)
InterPro	-
eggNOG	-
NR	GeneID:131000049

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057781786.1`
2	Vacuole	液泡	0.80000	`XP_057781785.1`
3	Cell wall	细胞壁	0.60000	`XP_057781785.1`
4	Nucleus	细胞核	0.00000	`XP_057781786.1`
5	Chromosome	染色体	0.00000	`XP_057781786.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3291451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B101,B57,D8
`Chr8:3291456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr8:3291488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:3292036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:3292071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:3292261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,B102,B5,C57,C82
`Chr8:3292262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:3292290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B80,C42,C62
`Chr8:3292490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B101,B32,B57,D8
`Chr8:3293660`	`GT`	`G`	1bp_deletion	frameshift_variant	2	B1,B68
`Chr8:3293660`	`GT`	`G`	1bp_deletion	CDS_variant	2	B1,B68
`Chr8:3293776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B7,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781785.1

865 aa

432

865

Glyco_hydro_35

Glyco_hydro_42

GHD

BetaGal_gal-bd

SUEL_Lectin

PF01301 Glyco_hydro_35 36-340 aa PF02449 Glyco_hydro_42 58-197 aa PF17834 GHD 363-419 aa PF21467 BetaGal_gal-bd 627-715 aa PF02140 SUEL_Lectin 771-848 aa

XP_057781786.1

694 aa

347

694

Glyco_hydro_35

GHD

BetaGal_gal-bd

SUEL_Lectin

PF01301 Glyco_hydro_35 8-169 aa PF17834 GHD 192-248 aa PF21467 BetaGal_gal-bd 456-544 aa PF02140 SUEL_Lectin 600-677 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781785.1`	Pfam	`PF01301`	Glyco_hydro_35	Domain	36	340	1.3e-120	403.6	Glycosyl hydrolases family 35
`XP_057781785.1`	Pfam	`PF02449`	Glyco_hydro_42	Domain	58	197	1e-06	29.1	Beta-galactosidase
`XP_057781785.1`	Pfam	`PF17834`	GHD	Domain	363	419	3.9e-24	84.8	Beta-sandwich domain in beta galactosidase
`XP_057781785.1`	Pfam	`PF21467`	BetaGal_gal-bd	Domain	627	715	7.9e-33	113.1	Beta-galactosidase, galactose-binding domain
`XP_057781785.1`	Pfam	`PF02140`	SUEL_Lectin	Domain	771	848	1.8e-20	73.8	D-galactoside/L-rhamnose binding SUEL lectin domain
`XP_057781786.1`	Pfam	`PF01301`	Glyco_hydro_35	Domain	8	169	3.5e-50	172.1	Glycosyl hydrolases family 35
`XP_057781786.1`	Pfam	`PF17834`	GHD	Domain	192	248	2.9e-24	85.3	Beta-sandwich domain in beta galactosidase
`XP_057781786.1`	Pfam	`PF21467`	BetaGal_gal-bd	Domain	456	544	4.3e-33	114.0	Beta-galactosidase, galactose-binding domain
`XP_057781786.1`	Pfam	`PF02140`	SUEL_Lectin	Domain	600	677	1.2e-20	74.3	D-galactoside/L-rhamnose binding SUEL lectin domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925802.1
AAAACATAACGGTCGTCGTTAAGCTTAATCCAACGGAATTGTCACCCTCCCGGCGCACGATAGCGCATAGATAGGACAGGCGTCTGCGAAGCTGAGCGAGTAGAAAACGCAGACGACGACAACGAAAAATGCCACGTGGCTGCATTGCTTGCTTGTCCTCTCCGGCGCACAATAGCTCATAGATTTTGATTTTGCTTTCTACACTATCCAGAGAGAGAGAGAGAGAGGACTAGCTTTCAGCTTATAAACACGCATGATTG...

XM_057925803.1
GCCAAGATTGTGAACATGATGAAGGAAGAAAATCTATATGCATCCCAAGGTGGACCTATTATTTTGTCTCAGGTATAGTATCGCGAAATATGGTGAATCCTGTAGACACTATGCATAAGATTGAGAATGAGTATGGGGATATTGATGCACCATATGGTAAGAGTGCCAAAACTTACATAAGTTGGGCTGCATCAATGGCTGTATCATTGGACACAGGGGTACCCTGGGTAATGTGCCAGCAAACTGATGCTCCGAATCCC...

CDS

2 records

下载 CDS FASTA

LOC131000049
ATGAGAGGCGGAGCAGTTGCGGCGGCGGCGCTTGATCTCTTGTTGATTTTGGCGGCGGCGACGACGTTTTGTTTTGGCGCCAATGTGACCTACGATCACCGGGGGCTGGTAATCGGCGGCAGGAGACGCGTTCTGATTTCCGGTTCCATTCATTACATGCGCAGCACTCCTCAAATGTGGTCAGATTTGATACAAAAATCGAAGGATGGAGGATTGGATGTGATTCAAACTTTTGTTTTCTGGAATCTGCACGAACCAAT...

LOC131000049
ATGGTGAATCCTGTAGACACTATGCATAAGATTGAGAATGAGTATGGGGATATTGATGCACCATATGGTAAGAGTGCCAAAACTTACATAAGTTGGGCTGCATCAATGGCTGTATCATTGGACACAGGGGTACCCTGGGTAATGTGCCAGCAAACTGATGCTCCGAATCCCATTATCAACGCTTGTAACGGGTTTTACTGTGACCAATTTTCCCCAAATGCAAATAATAAGCCAAAGATGTGGACAGAGAACTGGAGTGG...

Protein

2 records

下载 Protein FASTA

XP_057781785.1
MRGGAVAAAALDLLLILAAATTFCFGANVTYDHRGLVIGGRRRVLISGSIHYMRSTPQMWSDLIQKSKDGGLDVIQTFVFWNLHEPIRGQYDFTGRKDLVKFVKLVGEAGLMVHLRIGPYACAEWNYGGFPLWLHFIPGIVLRTDNEPFKAEMKRFTAKIVNMMKEENLYASQGGPIILSQIENEYGDIDAPYGKSAKTYISWAASMAVSLDTGVPWVMCQQTDAPNPIINACNGFYCDQFSPNANNKPKMWTENWSGWF...

XP_057781786.1
MVNPVDTMHKIENEYGDIDAPYGKSAKTYISWAASMAVSLDTGVPWVMCQQTDAPNPIINACNGFYCDQFSPNANNKPKMWTENWSGWFSSFGDPVPHRPTEDTAFSTARFYQLGGSFMNYYMYHGGTNFGRTSGGPFITTSYDYDAPIDEYGLLRQPKWGHLKDVHNAVKLCEEALVATDPKTNSLGPSLEATVYKTESGLCAAFLANVDAQSDATVNFSGSSYHLPAWSVSILPDCKTVAINTAKINSAATISKFVPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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