Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000476`

染色体: Chr08 坐标: 3402669-3411860 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000476`
名称	SmilChr08G000476
描述	uncharacterized SmilChr08G000476
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3402669 - 3411860 / `+`

ID 对照

NCBI Gene ID	`LOC131000065`
GeneID	`131000065`
locus_tag	`-`
NCBI Name	`LOC131000065`
原始查询	`SmilChr08G000476`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314]; symbol=AT1G07990; hit=AT1G07990; species=arabidopsis; confidence=high
产物	SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314]; symbol=AT1G07990; hit=AT1G07990; species=arabidopsis; confidence=high
Arabidopsis	`AT1G07990` (AT1G07990) SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314] identity=64.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0620400` - identity=62.5; qcov=0.748; evalue=0; confidence=high
GO	GO:0019888 (protein phosphatase regulator activity); GO:0019903 (protein phosphatase binding); GO:0043666 (GO:0043666)
KEGG	-
Pfam	PF04499 (SAPS)
InterPro	-
eggNOG	-
NR	GeneID:131000065

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057781807.1`
2	Cytoplasm	细胞质	0.80000	`XP_057781807.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057781807.1`
4	Nucleus	细胞核	0.00000	`XP_057781807.1`
5	Chromosome	染色体	0.00000	`XP_057781807.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3407944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,B93,C60
`Chr8:3408421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr8:3409138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:3409228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr8:3409423`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D10
`Chr8:3409423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:3409969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:3410754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr8:3410812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B28
`Chr8:3410887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B40
`Chr8:3410933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C73,C82
`Chr8:3410942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781807.1

850 aa

425

850

SAPS

PF04499 SAPS 131-490 aa

XP_057781808.1

849 aa

424

849

SAPS

PF04499 SAPS 131-490 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781807.1`	Pfam	`PF04499`	SAPS	Family	131	490	1.2e-67	229.5	SIT4 phosphatase-associated protein
`XP_057781808.1`	Pfam	`PF04499`	SAPS	Family	131	490	1.2e-67	229.5	SIT4 phosphatase-associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925824.1
CACCAACAAAAAAAAAAGAAAAAAGAAAAAAAAGGGGAAGGAAGGAAAAGAAAAGGTGTCAAGCAGGTTCGATCTTTGCGGCTTCTCTTCCACTTTCGATCTCCCAAAATTAGGGTTTTTCTGCCCCCACCACTCCTCTTTCGCTCCAATTTCTCCTAAACCCCTCGTTTGAAATCTCCAACCATCATCTCCCCCTCTGTCCATCTCTGCTTATACTGATTCAGAATTACGGGTTTACAGATCTGTTCAACTTCTTTTTT...

XM_057925825.1
CACCAACAAAAAAAAAAGAAAAAAGAAAAAAAAGGGGAAGGAAGGAAAAGAAAAGGTGTCAAGCAGGTTCGATCTTTGCGGCTTCTCTTCCACTTTCGATCTCCCAAAATTAGGGTTTTTCTGCCCCCACCACTCCTCTTTCGCTCCAATTTCTCCTAAACCCCTCGTTTGAAATCTCCAACCATCATCTCCCCCTCTGTCCATCTCTGCTTATACTGATTCAGAATTACGGGTTTACAGATCTGTTCAACTTCTTTTTT...

CDS

2 records

下载 CDS FASTA

LOC131000065
ATGTTCTGGAAGCTCACAGCTCTTTCTGCTTCTTCTCCCGTTGAGTCTGTGCTCGACAAGGAAAATTTTACCCTGGAAGAGCTCTTGGATGAAGAGGAGATAATCCAAGAGTGTAAAGCGTTAAACAGCCGCCTTATAAATTTTTTGAGAGATAGAGCTCAGGTTGAGCAGTTGGTGCGATATATTGTTGAGGAACCCCCAGAAGATGCAGATAGCAAACGGACCTTCAAGTTCCCTTTTGTTGCGTGTGAAATTTTCAC...

Protein

2 records

下载 Protein FASTA

XP_057781807.1
MFWKLTALSASSPVESVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLVRYIVEEPPEDADSKRTFKFPFVACEIFTCEIDVILKTLVDEEELMHLLFNFLEPNRPHSALLAGYFSKVAVCLMIRKTVPLMNYVKAHQDVLKQLVDLIGITSIMEVLVRLVGADDHLYPNSLDVMQWLTDSNLLEMIVDKLNTLNPPEVHANAAETLCSITRNAPSPLATKLSSSSFVARIFGHALEDSQSKSALVHSLS...

XP_057781808.1
MFWKLTALSASSPVESVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLVRYIVEEPPEDADSKRTFKFPFVACEIFTCEIDVILKTLVDEEELMHLLFNFLEPNRPHSALLAGYFSKVAVCLMIRKTVPLMNYVKAHQDVLKQLVDLIGITSIMEVLVRLVGADDHLYPNSLDVMQWLTDSNLLEMIVDKLNTLNPPEVHANAAETLCSITRNAPSPLATKLSSSSFVARIFGHALEDSQSKSALVHSLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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