当前解析结果
SmilChr08G000477| 统一新 Gene ID | SmilChr08G000477 |
|---|---|
| 名称 | SmilChr08G000477 |
| 描述 | peroxidase N-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3413245 - 3415516 / + |
| NCBI Gene ID | LOC131000068 |
|---|---|
| GeneID | 131000068 |
| locus_tag | - |
| NCBI Name | LOC131000068 |
| 原始查询 | SmilChr08G000477 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase N-like |
| 产物 | peroxidase N-like |
| Arabidopsis | AT5G19890 (AT5G19890)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832111] identity=61.1; qcov=0.994; evalue=1.49e-143; confidence=high |
| Rice | Os10g0109600 (poxA)- identity=58.3; qcov=1; evalue=3.89e-131; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000068 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057781810.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057781810.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057781810.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781810.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3413440 |
G |
GCA |
2bp_insertion | frameshift_variant | 96 | A10,A11,A16,A18,A23,A24,A4,A6,A7,A8,A9,B100,B104,B106,B108,B109,B112,B118,B119,B124,B129,B131,B134,B140,B19,B24,B26,B27,B28,B29,B31,B32,B35,B38,B39,B4,B41,B42,B43,B49,B51,B53,B54,B56,B57,B6,B61,B64,B71,B73,B74,B76,B77,B78,B81,B83,B84,B86,B87,B9,B90,B91,B92,B95,B96,B98,C14,C19,C21,C25,C29,C3,C31,C33,C4,C43,C46,C47,C53,C54,C58,C61,C62,C67,C7,C71,C72,C79,C81,C84,D10,D11,D3,D4,D7,D9 |
Chr8:3413442 |
AGC |
A |
2bp_deletion | frameshift_variant | 96 | A10,A11,A16,A18,A23,A24,A4,A6,A7,A8,A9,B100,B104,B106,B108,B109,B112,B118,B119,B124,B129,B131,B134,B140,B19,B24,B26,B27,B28,B29,B31,B32,B35,B38,B39,B4,B41,B42,B43,B49,B51,B53,B54,B56,B57,B6,B61,B64,B71,B73,B74,B76,B77,B78,B81,B83,B84,B86,B87,B9,B90,B91,B92,B95,B96,B98,C14,C19,C21,C25,C29,C3,C31,C33,C4,C43,C46,C47,C53,C54,C58,C61,C62,C67,C7,C71,C72,C79,C81,C84,D10,D11,D3,D4,D7,D9 |
Chr8:3414852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B117,B72,B75,C35 |
Chr8:3415005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B47,B52 |
Chr8:3415031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,D2 |
Chr8:3415061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B27,B47,B52,C85 |
Chr8:3415069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B47,B52 |
Chr8:3415116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B64,C28 |
Chr8:3415133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B36,B93,C11,C69 |
Chr8:3415164 |
C |
CCA |
2bp_insertion | frameshift_variant | 3 | B63,C15,C81 |
Chr8:3415164 |
C |
CCA |
2bp_insertion | CDS_variant | 3 | B63,C15,C81 |
Chr8:3415319 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B26,B9,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781810.1PF00141
peroxidase 36-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781810.1 |
Pfam | PF00141 |
peroxidase | Domain | 36 | 280 | 1.2e-82 | 278.0 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。