Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000500`

染色体: Chr08 坐标: 3654099-3657635 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000500`
名称	SmilChr08G000500
描述	vacuolar protein sorting-associated protein 24 homolog 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3654099 - 3657635 / `-`

ID 对照

NCBI Gene ID	`LOC131000092`
GeneID	`131000092`
locus_tag	`-`
NCBI Name	`LOC131000092`
原始查询	`SmilChr08G000500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 24 homolog 1
产物	vacuolar protein sorting-associated protein 24 homolog 1
Arabidopsis	`AT5G22950` (VPS24.1) SNF7 family protein [Source:NCBI gene (formerly Entrezgene);Acc:832359] identity=75.3; qcov=0.954; evalue=4.49e-74; confidence=high
Rice	`Os03g0108400` - identity=71.4; qcov=0.966; evalue=8.48e-71; confidence=high
GO	GO:0000815 (ESCRT III complex); GO:0005771 (multivesicular body); GO:0015031 (protein transport); GO:0032509 (endosome transport via multivesicular body sorting pathway); GO:0045324 (late endosome to vacuole transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03357 (Snf7)
InterPro	-
eggNOG	-
NR	GeneID:131000092

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057781843.1`
2	Cytosol	细胞质基质	1.00000	`XP_057781845.1`
3	Vesicle	囊泡	0.60000	`XP_057781844.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057781845.1`
5	Midbody	Midbody	0.40000	`XP_057781844.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3654319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr8:3654338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B32,B68
`Chr8:3654361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr8:3655486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:3655487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781843.1

250 aa

125

250

Snf7

PF03357 Snf7 21-186 aa

XP_057781844.1

222 aa

111

222

Snf7

PF03357 Snf7 21-186 aa

XP_057781845.1

174 aa

174

Snf7

PF03357 Snf7 3-138 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781843.1`	Pfam	`PF03357`	Snf7	Family	21	186	9.9e-33	113.9	Snf7
`XP_057781844.1`	Pfam	`PF03357`	Snf7	Family	21	186	6e-33	114.6	Snf7
`XP_057781845.1`	Pfam	`PF03357`	Snf7	Family	3	138	5.6e-24	85.4	Snf7

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925861.1
CGAAACTCTACGCGCATTCGCATTTGGCAGTTGGCACCCAAGTCCTTATCTACTCAATAATCTAAAATCTCAAACCTTGAGCTGATTTGTTCATACAATTAACGACTTCTATCTCATCGTTTCTAACATTGAATCACTAAAAATTCAGTTTTTCTTTTTTGTTCTGTACAAATATCCGGATCATAATATCCATATACATAGCAGAACTCTGAAGAAATTCCCAAAATTCGAAAGCAGAAAAAGAAAATCATTTCTTTTCC...

XM_057925860.1
CATTCGCATTTGGCAGTTGGCACCCAAGTCCTTATCTACTCAATAATCTAAAATCTCAAACCTTGAGCTGATTTGTTCATACAATTAACGACTTCTATCTCATCGTTTCTAACATTGAATCACTAAAAATTCAGTTTTTCTTTTTTGTTCTGTACAAATATCCGGATCATAATATCCATATACATAGCAGAACTCTGAAGAAATTCCCAAAATTCGAAAGCAGAAAAAGAAAATCATTTCTTTTCCAAGGATTTATTGAT...

CDS

3 records

下载 CDS FASTA

LOC131000092
ATGGAAAAGATGAAGAATGTATTGAAGCCGAAACCTAATCCTCAGCAATTACTCAAAGATTGGCAGCGTCGCCTCCGCCAAGAGTGTCGCAATATCGAACGCCAAATCCGAGACATACAGAGAGAAGAGAAGAATGTGCAGAAAGCGATCAAAGAGGCTGCAAAGAGAAATGACATGGGTTCTGCTAAGGCACTAGCGAAAGAAATTGTGAGATCTAGGAAGACTGTGAACCGTCTGTATGAAAATAAAGCACAGATGAA...

Protein

3 records

下载 Protein FASTA

XP_057781843.1
MEKMKNVLKPKPNPQQLLKDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMGSAKALAKEIVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKSSEVAVTMQEFSKEMTKAGIVEEMMNDTLDNALDSEDIEEETEEEIEKVLSAIAGETAAQLPETIRKQKLKQPATSQDAEVCFNASQAAIHHPLFRFLNFSSDFINLQENVDDEEELEEMRARLARVRS

XP_057781844.1
MEKMKNVLKPKPNPQQLLKDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMGSAKALAKEIVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKSSEVAVTMQEFSKEMTKAGIVEEMMNDTLDNALDSEDIEEETEEEIEKVLSAIAGETAAQLPETIRKQKLKQPATSQDAEENVDDEEELEEMRARLARVRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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