Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000508`

染色体: Chr08 坐标: 3710527-3711457 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000508`
名称	SmilChr08G000508
描述	uncharacterized SmilChr08G000508
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3710527 - 3711457 / `+`

ID 对照

NCBI Gene ID	`LOC131000100`
GeneID	`131000100`
locus_tag	`-`
NCBI Name	`LOC131000100`
原始查询	`SmilChr08G000508`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0153500; species=rice; confidence=medium
产物	hit=Os01g0153500; species=rice; confidence=medium
Arabidopsis	`AT3G09110` (AT3G09110) - identity=30.5; qcov=1.1; evalue=9.31e-18; confidence=low
Rice	`Os01g0153500` - identity=42.3; qcov=1.19; evalue=9.29e-44; confidence=medium
GO	-
KEGG	-
Pfam	PF05056 (DUF674)
InterPro	-
eggNOG	-
NR	GeneID:131000100

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781852.1`
2	Cytoplasm	细胞质	0.60000	`XP_057781852.1`
3	Cytosol	细胞质基质	0.20000	`XP_057781852.1`
4	Chromosome	染色体	0.00000	`XP_057781852.1`
5	Centromere	着丝粒	0.00000	`XP_057781852.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3710736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,B56,B83,C53,C68
`Chr8:3710784`	`C`	`CT`	1bp_insertion	frameshift_variant	3	B120,B60,C7
`Chr8:3710784`	`C`	`CT`	1bp_insertion	CDS_variant	3	B120,B60,C7
`Chr8:3710820`	`TCG`	`T`	2bp_deletion	frameshift_variant	5	B14,B62,C24,C43,C82
`Chr8:3710820`	`TCG`	`T`	2bp_deletion	CDS_variant	5	B14,B62,C24,C43,C82
`Chr8:3710843`	`T`	`TGC`	2bp_insertion	frameshift_variant	5	B108,B130,B49,B90,C15
`Chr8:3710843`	`T`	`TGC`	2bp_insertion	CDS_variant	5	B108,B130,B49,B90,C15
`Chr8:3710909`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B5,B61
`Chr8:3710909`	`A`	`AT`	1bp_insertion	CDS_variant	2	B5,B61
`Chr8:3710927`	`ATC`	`A`	2bp_deletion	frameshift_variant	3	A3,B3,D7
`Chr8:3710927`	`ATC`	`A`	2bp_deletion	CDS_variant	3	A3,B3,D7
`Chr8:3710929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B135,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781852.1

196 aa

196

DUF674

PF05056 DUF674 3-108 aa PF05056 DUF674 121-195 aa

XP_057781853.1

181 aa

181

DUF674

PF05056 DUF674 3-107 aa PF05056 DUF674 122-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781852.1`	Pfam	`PF05056`	DUF674	Family	3	108	1.1e-35	124.2	Protein of unknown function (DUF674)
`XP_057781852.1`	Pfam	`PF05056`	DUF674	Family	121	195	1.1e-35	124.2	Protein of unknown function (DUF674)
`XP_057781853.1`	Pfam	`PF05056`	DUF674	Family	3	107	3.6e-31	109.2	Protein of unknown function (DUF674)
`XP_057781853.1`	Pfam	`PF05056`	DUF674	Family	122	173	3.6e-31	109.2	Protein of unknown function (DUF674)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925869.1
CATCTTGCTTGCAAGCAAAAAACCTGCCCCTCCACTGCACCAATGCAGCGCTACGGTCGAAGCCCAAGACAATTTGATATCATTTTTTCAGAAAAAGAAAATTGCTTAAAATCTATATAAATGAATATTGGTGAATAGAAGAGAAGCAAGGCAGTAGTAGGCATGGCGGAATCGACGGTGAGCATGAAGCTGTTGATCGACAAGAGAGGGAAGCGAGTGGTATTCGCGGAGGCCGGAAAAGACTGCGTGGATTTCCTCTT...

XM_057925870.1
CATCTTGCTTGCAAGCAAAAAACCTGCCCCTCCACTGCACCAATGCAGCGCTACGGTCGAAGCCCAAGACAATTTGATATCATTTTTTCAGAAAAAGAAAATTGCTTAAAATCTATATAAATGAATATTGGTGAATAGAAGAGAAGCAAGGCAGTAGTAGGCATGGCGGAATCGACGGTGAGCATGAAGCTGTTGATCGACAAGAGAGGGAAGCGAGTGGTATTCGCGGAGGCCGGAAAAGACTGCGTGGATTTCCTCTT...

CDS

2 records

下载 CDS FASTA

LOC131000100
ATGGCGGAATCGACGGTGAGCATGAAGCTGTTGATCGACAAGAGAGGGAAGCGAGTGGTATTCGCGGAGGCCGGAAAAGACTGCGTGGATTTCCTCTTCAGCATACTGTCTCTGCCCGTTGCCACCATCATTCGCTTGCTCAGAGAGGAAGGCATGGATGGCTCTTTGCCCAACCTCTACAAAAGCTTGGAAAATCTCAACGACGACTACATAGAGCCCGACAAGAAGAAGGACTTCTATCTGAAACCGGTCTCCTCTTC...

Protein

2 records

下载 Protein FASTA

XP_057781852.1
MAESTVSMKLLIDKRGKRVVFAEAGKDCVDFLFSILSLPVATIIRLLREEGMDGSLPNLYKSLENLNDDYIEPDKKKDFYLKPVSSSSLPLLALEAASSTGNNSYRCNYCSHYIDPNAQVVSGDGSLVKGVVTYMVMDDLEIKPMSTISSITLLNDFNVKYVGALKEKVVHLGMDEALELLKISLQSKNVLTELFC

XP_057781853.1
MAESTVSMKLLIDKRGKRVVFAEAGKDCVDFLFSILSLPVATIIRLLREEGMDGSLPNLYKSLENLNDDYIEPDKKKDFYLKPVSSSSLPLLALEAASSTGNNSYRCNYCSHYIDPNAQVVSGDGSLVKGVVTYMVMDDLEIKPMSTISSITLLNDFNVKYVGALKEKVVHLGMDEKHYLI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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