当前解析结果
SmilChr08G000521| 统一新 Gene ID | SmilChr08G000521 |
|---|---|
| 名称 | SmilChr08G000521 |
| 描述 | uncharacterized SmilChr08G000521 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3794482 - 3795562 / + |
| NCBI Gene ID | LOC131000111 |
|---|---|
| GeneID | 131000111 |
| locus_tag | - |
| NCBI Name | LOC131000111 |
| 原始查询 | SmilChr08G000521 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | enabled-like protein (DUF1635) [Source:NCBI gene (formerly Entrezgene);Acc:832357]; symbol=AT5G22930; hit=AT5G22930; species=arabidopsis; confidence=high |
| 产物 | enabled-like protein (DUF1635) [Source:NCBI gene (formerly Entrezgene);Acc:832357]; symbol=AT5G22930; hit=AT5G22930; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G22930 (AT5G22930)enabled-like protein (DUF1635) [Source:NCBI gene (formerly Entrezgene);Acc:832357] identity=46.2; qcov=1.21; evalue=6.72e-63; confidence=high |
| Rice | Os05g0115100 (OJ1654_B10.11-2)- identity=35.4; qcov=1; evalue=6.37e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF07795 (DUF1635) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000111 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781861.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057781861.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057781861.1 |
| 4 | Nuclear body | 核内小体 | 0.20000 | XP_057781861.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057781861.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3794635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr8:3794798 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B87 |
Chr8:3794798 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B87 |
Chr8:3794863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr8:3795003 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr8:3795019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B23,B4,C27,C44 |
Chr8:3795060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr8:3795075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:3795126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B23,B4,C27 |
Chr8:3795186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr8:3795196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B23,B4,C27,C44 |
Chr8:3795228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B115 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781861.1PF07795
DUF1635 18-194 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781861.1 |
Pfam | PF07795 |
DUF1635 | Family | 18 | 194 | 6e-54 | 184.0 | Protein of unknown function (DUF1635) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。