当前解析结果
SmilChr08G000538| 统一新 Gene ID | SmilChr08G000538 |
|---|---|
| 名称 | SmilChr08G000538 |
| 描述 | vacuolar protein sorting-associated protein 41 homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3919587 - 3928432 / + |
| NCBI Gene ID | LOC131000128 |
|---|---|
| GeneID | 131000128 |
| locus_tag | - |
| NCBI Name | LOC131000128 |
| 原始查询 | SmilChr08G000538 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | vacuolar protein sorting-associated protein 41 homolog |
| 产物 | vacuolar protein sorting-associated protein 41 homolog |
| Arabidopsis | AT1G08190 (VPS41)vacuolar protein sorting 41 [Source:NCBI gene (formerly Entrezgene);Acc:837340] identity=71.9; qcov=0.986; evalue=0; confidence=high |
| Rice | Os04g0195000 (OsWD40-99)- identity=65.7; qcov=1; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005770 (late endosome); GO:0006623 (protein targeting to vacuole); GO:0009267 (cellular response to starvation); GO:0016192 (vesicle-mediated transport); GO:0016236 (macroautophagy); GO:0030897 (HOPS complex); GO:0034058 (endosomal vesicle fusion) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00637 (Clathrin); PF23411 (Beta-prop_Vps41); PF23555 (zf-RING_Vps41); PF23556 (TPR_Vps41); PF28737 (VPS18_solenoid_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000128 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781883.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057781883.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057781883.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057781883.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057781883.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3919919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C11,C69 |
Chr8:3919991 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr8:3920849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr8:3921217 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C62 |
Chr8:3921217 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C62 |
Chr8:3921599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B56,B96,C85,D7 |
Chr8:3921623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B40 |
Chr8:3922716 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:3922750 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | B137,B54,B73,C17,C30,C57,C59,D8 |
Chr8:3922800 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | B96 |
Chr8:3922800 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | B96 |
Chr8:3922814 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781883.1PF23411
Beta-prop_Vps41 41-403 aa
PF23556
TPR_Vps41 439-778 aa
PF28737
VPS18_solenoid_2nd 586-744 aa
PF00637
Clathrin 623-756 aa
PF23555
zf-RING_Vps41 875-913 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781883.1 |
Pfam | PF23411 |
Beta-prop_Vps41 | Repeat | 41 | 403 | 1.4e-95 | 321.1 | Vps42 beta-propeller |
XP_057781883.1 |
Pfam | PF23556 |
TPR_Vps41 | Repeat | 439 | 778 | 6.8e-143 | 476.6 | Vps41 TPR-like region |
XP_057781883.1 |
Pfam | PF28737 |
VPS18_solenoid_2nd | Repeat | 586 | 744 | 6.1e-10 | 40.0 | VPS18, alpha-solenoid domain, second half |
XP_057781883.1 |
Pfam | PF00637 |
Clathrin | Repeat | 623 | 756 | 1.7e-12 | 48.0 | Region in Clathrin and VPS |
XP_057781883.1 |
Pfam | PF23555 |
zf-RING_Vps41 | Domain | 875 | 913 | 9.1e-13 | 48.3 | Vps41 C-terminal RING finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。