当前解析结果
SmilChr08G000542| 统一新 Gene ID | SmilChr08G000542 |
|---|---|
| 名称 | SmilChr08G000542 |
| 描述 | uncharacterized SmilChr08G000542 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3949923 - 3952453 / - |
| NCBI Gene ID | LOC130997145 |
|---|---|
| GeneID | 130997145 |
| locus_tag | - |
| NCBI Name | LOC130997145 |
| 原始查询 | SmilChr08G000542 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=24.1; qcov=0.823; evalue=4.88e-58; confidence=weak |
| Rice | Os06g0704400- identity=31.7; qcov=0.956; evalue=1.14e-109; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997145 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778387.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057778387.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057778387.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057778387.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057778387.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3950151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:3950379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C16 |
Chr8:3950383 |
G |
A |
EMS_canonical_SNV | stop_gained | 23 | A13,A18,A7,A8,B101,B118,B24,B4,B68,B81,B84,B98,C2,C27,C36,C39,C41,C48,C5,C56,C59,C60,C85 |
Chr8:3950401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,C5 |
Chr8:3950552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:3950559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,D2,D8 |
Chr8:3950655 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | C29,C54 |
Chr8:3950655 |
TA |
T |
1bp_deletion | CDS_variant | 2 | C29,C54 |
Chr8:3950659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C54 |
Chr8:3950676 |
TTC |
* |
2bp_deletion | CDS_variant | 1 | B45 |
Chr8:3950720 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,C40 |
Chr8:3950742 |
C |
CT |
1bp_insertion | frameshift_variant | 60 | A10,A13,A15,A16,A19,A2,A22,A7,B10,B102,B113,B115,B123,B13,B135,B14,B23,B24,B25,B34,B35,B37,B42,B43,B45,B51,B53,B56,B58,B61,B63,B65,B71,B72,B76,B78,B83,B86,B89,B92,B96,B97,C16,C17,C19,C24,C3,C38,C47,C49,C5,C59,C60,C75,C77,C80,C81,D11,D4,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778387.1PF03108
DBD_Tnp_Mut 34-95 aa
PF10551
MULE 230-325 aa
PF04434
SWIM 468-508 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778387.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 34 | 95 | 4.7e-12 | 46.1 | MuDR family transposase |
XP_057778387.1 |
Pfam | PF10551 |
MULE | Domain | 230 | 325 | 4.8e-18 | 66.1 | MULE transposase domain |
XP_057778387.1 |
Pfam | PF04434 |
SWIM | Domain | 468 | 508 | 3.6e-08 | 33.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。