当前解析结果
SmilChr08G000543| 统一新 Gene ID | SmilChr08G000543 |
|---|---|
| 名称 | SmilChr08G000543 |
| 描述 | aspartic proteinase 36-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3957649 - 3962026 / + |
| NCBI Gene ID | LOC131000132 |
|---|---|
| GeneID | 131000132 |
| locus_tag | - |
| NCBI Name | LOC131000132 |
| 原始查询 | SmilChr08G000543 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartic proteinase 36-like |
| 产物 | aspartic proteinase 36-like |
| Arabidopsis | AT5G22850 (AT5G22850)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:832348] identity=69.4; qcov=0.953; evalue=0; confidence=high |
| Rice | Os01g0777200 (P0413G02.28)- identity=65.6; qcov=0.914; evalue=0; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000132 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781887.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057781887.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781887.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781887.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781887.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3958030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:3958150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C82 |
Chr8:3958768 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B95 |
Chr8:3958768 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B95 |
Chr8:3958827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C75 |
Chr8:3959171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B6,C30,C67 |
Chr8:3960384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B6,C30,C67 |
Chr8:3960436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B68 |
Chr8:3960740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C24 |
Chr8:3960760 |
TA |
T |
1bp_deletion | frameshift_variant | 9 | A25,B139,B18,B2,B47,B6,C58,C60,C74 |
Chr8:3961366 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B57,B83,C25,C53 |
Chr8:3961379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781887.1PF14543
TAXi_N 77-260 aa
PF00026
Asp 77-430 aa
PF14541
TAXi_C 277-429 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781887.1 |
Pfam | PF14543 |
TAXi_N | Domain | 77 | 260 | 4.5e-43 | 148.2 | Xylanase inhibitor N-terminal |
XP_057781887.1 |
Pfam | PF00026 |
Asp | Domain | 77 | 430 | 3.2e-35 | 122.8 | Eukaryotic aspartyl protease |
XP_057781887.1 |
Pfam | PF14541 |
TAXi_C | Domain | 277 | 429 | 4.9e-29 | 101.9 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。