当前解析结果
SmilChr08G000550| 统一新 Gene ID | SmilChr08G000550 |
|---|---|
| 名称 | SmilChr08G000550 |
| 描述 | UDP-D-apiose/UDP-D-xylose synthase 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3996263 - 4000001 / + |
| NCBI Gene ID | LOC131000137 |
|---|---|
| GeneID | 131000137 |
| locus_tag | - |
| NCBI Name | LOC131000137 |
| 原始查询 | SmilChr08G000550 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-D-apiose/UDP-D-xylose synthase 1-like |
| 产物 | UDP-D-apiose/UDP-D-xylose synthase 1-like |
| Arabidopsis | AT1G08200 (AXS2)UDP-D-apiose/UDP-D-xylose synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837341] identity=88.5; qcov=0.99; evalue=0; confidence=high |
| Rice | Os01g0969100- identity=84.3; qcov=0.99; evalue=0; confidence=high |
| GO | GO:0016831 (carboxy-lyase activity) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF03435 (Sacchrp_dh_NADP); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000137 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781895.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057781895.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057781895.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781895.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781895.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3996819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B19 |
Chr8:3996850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr8:3997396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C18,C22,C55 |
Chr8:3997656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B41,B73,C7 |
Chr8:3998759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr8:3998859 |
T |
TTG |
2bp_insertion | frameshift_variant | 6 | B12,B28,B41,B9,C54,C82 |
Chr8:3998968 |
A |
ATC |
2bp_insertion | frameshift_variant | 6 | B133,B28,B41,B92,C54,C82 |
Chr8:3999011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,C82 |
Chr8:3999013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C82 |
Chr8:3999014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C65 |
Chr8:3999015 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B28,C82 |
Chr8:3999015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781895.1PF03435
Sacchrp_dh_NADP 18-95 aa
PF01370
Epimerase 18-288 aa
PF02719
Polysacc_synt_2 19-137 aa
PF01073
3Beta_HSD 20-143 aa
PF16363
GDP_Man_Dehyd 22-364 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781895.1 |
Pfam | PF03435 |
Sacchrp_dh_NADP | Family | 18 | 95 | 1.6e-07 | 32.4 | Saccharopine dehydrogenase NADP binding domain |
XP_057781895.1 |
Pfam | PF01370 |
Epimerase | Family | 18 | 288 | 6.1e-50 | 170.6 | NAD dependent epimerase/dehydratase family |
XP_057781895.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 19 | 137 | 1.2e-07 | 31.9 | Polysaccharide biosynthesis protein |
XP_057781895.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 20 | 143 | 2.5e-07 | 30.7 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057781895.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 22 | 364 | 5.7e-30 | 105.6 | GDP-mannose 4,6 dehydratase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。