当前解析结果
SmilChr08G000551| 统一新 Gene ID | SmilChr08G000551 |
|---|---|
| 名称 | SmilChr08G000551 |
| 描述 | uncharacterized SmilChr08G000551 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4001465 - 4003320 / - |
| NCBI Gene ID | LOC131000140 |
|---|---|
| GeneID | 131000140 |
| locus_tag | - |
| NCBI Name | LOC131000140 |
| 原始查询 | SmilChr08G000551 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745712]; symbol=AT4G16380; hit=AT4G16380; species=arabidopsis; confidence=low |
| 产物 | Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745712]; symbol=AT4G16380; hit=AT4G16380; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G16380 (AT4G16380)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:2745712] identity=52; qcov=0.701; evalue=1.84e-19; confidence=low |
| Rice | Os03g0412300- identity=35.4; qcov=0.738; evalue=1.35e-06; confidence=low |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000140 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057781899.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057781899.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057781899.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781899.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781899.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4002822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B112,B41,B73,C7 |
Chr8:4002870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B41,B73,C7 |
Chr8:4002889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr8:4003162 |
GTA |
G |
2bp_deletion | frameshift_variant | 136 | A1,A14,A15,A16,A18,A19,A20,A22,A23,A25,A4,A5,A7,B1,B100,B101,B102,B103,B104,B106,B107,B11,B111,B112,B114,B115,B117,B118,B119,B12,B120,B123,B125,B127,B128,B129,B13,B131,B132,B134,B137,B138,B139,B14,B140,B16,B22,B25,B26,B27,B28,B3,B31,B32,B33,B35,B37,B44,B46,B47,B49,B51,B52,B53,B54,B56,B59,B6,B66,B68,B69,B73,B74,B75,B76,B77,B82,B83,B87,B90,B91,B92,B93,B95,B98,C12,C13,C15,C16,C17,C18,C19,C20,C24,C25,C26,C29,C31,C32,C35,C37,C40,C43,C44,C46,C49,C51,C52,C54,C55,C58,C59,C6,C60,C64,C65,C66,C68,C69,C7,C70,C72,C73,C74,C77,C78,C79,C81,C82,C83,C84,D1,D10,D11,D4,D7 |
Chr8:4003180 |
CTG |
C |
2bp_deletion | frameshift_variant | 1 | B49 |
Chr8:4003180 |
CTG |
C |
2bp_deletion | CDS_variant | 1 | B49 |
Chr8:4003183 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr8:4003183 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B49 |
Chr8:4003202 |
TTA |
T |
2bp_deletion | frameshift_variant | 137 | A1,A14,A15,A16,A18,A19,A20,A21,A23,A25,A6,A7,A9,B1,B101,B102,B103,B104,B106,B107,B11,B111,B112,B115,B117,B118,B119,B123,B124,B125,B127,B128,B129,B13,B130,B131,B137,B139,B14,B16,B21,B22,B25,B26,B28,B3,B31,B32,B33,B35,B37,B4,B43,B44,B47,B50,B51,B52,B53,B54,B55,B56,B58,B6,B60,B63,B64,B65,B66,B68,B69,B73,B74,B75,B76,B77,B78,B8,B82,B86,B90,B91,B92,B93,B95,B97,B98,C13,C15,C16,C18,C19,C24,C25,C26,C28,C29,C31,C32,C35,C37,C38,C4,C40,C44,C46,C49,C51,C55,C58,C59,C6,C60,C64,C65,C66,C68,C69,C7,C72,C73,C74,C75,C77,C78,C79,C81,C83,C84,C85,C87,D1,D10,D11,D4,D7,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。