Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000554`

染色体: Chr08 坐标: 4014634-4022337 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000554`
名称	SmilChr08G000554
描述	DDT domain-containing protein PTM-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4014634 - 4022337 / `-`

ID 对照

NCBI Gene ID	`LOC131000143`
GeneID	`131000143`
locus_tag	`-`
NCBI Name	`LOC131000143`
原始查询	`SmilChr08G000554`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DDT domain-containing protein PTM-like
产物	DDT domain-containing protein PTM-like
Arabidopsis	`AT5G22760` (AT5G22760) PHD finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:832339] identity=37.8; qcov=0.594; evalue=0; confidence=medium
Rice	`Os11g0148700` - identity=40.5; qcov=0.289; evalue=1.96e-104; confidence=weak
GO	-
KEGG	-
Pfam	PF00628 (PHD); PF02791 (DDT); PF15612 (WHIM1); PF21743 (PTM_DIR17_Tudor); PF24294 (Chromo_PTM)
InterPro	-
eggNOG	-
NR	GeneID:131000143

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781902.1`
2	Chromosome	染色体	0.00000	`XP_057781902.1`
3	Centromere	着丝粒	0.00000	`XP_057781902.1`
4	Chromatin	染色质	0.00000	`XP_057781902.1`
5	Telomere	端粒	0.00000	`XP_057781902.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4015044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:4015097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,B88
`Chr8:4015133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr8:4015274`	`CT`	`C`	1bp_deletion	frameshift_variant	54	A15,A7,A8,B103,B109,B111,B119,B121,B122,B127,B132,B134,B137,B14,B19,B36,B37,B52,B54,B57,B58,B6,B62,B63,B65,B71,B75,B76,B83,B84,B87,B88,B93,B98,C13,C2,C25,C27,C29,C30,C31,C35,C4,C41,C43,C44,C46,C53,C61,C67,C70,C73,C86,D10
`Chr8:4015572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B40
`Chr8:4015618`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr8:4015631`	`ATG`	`A`	2bp_deletion	frameshift_variant	92	A1,A13,A18,A19,A22,A25,A4,A5,B101,B102,B117,B118,B123,B128,B13,B131,B139,B140,B15,B16,B18,B2,B21,B25,B26,B29,B31,B32,B33,B36,B38,B39,B4,B42,B43,B44,B46,B47,B48,B49,B56,B59,B6,B65,B66,B74,B80,B85,B86,B90,B92,C14,C18,C22,C26,C28,C3,C34,C37,C39,C42,C44,C50,C51,C55,C56,C58,C60,C64,C65,C66,C70,C73,C74,C76,C77,C78,C79,C8,C82,C83,C85,C87,D1,D10,D11,D3,D4,D6,D7,D8,D9
`Chr8:4015636`	`C`	`CAT`	2bp_insertion	frameshift_variant	92	A1,A13,A18,A19,A22,A25,A4,A5,B101,B102,B117,B118,B123,B128,B13,B131,B139,B140,B15,B16,B18,B2,B21,B25,B26,B29,B31,B32,B33,B36,B38,B39,B4,B42,B43,B44,B46,B47,B48,B49,B56,B59,B6,B65,B66,B74,B80,B85,B86,B90,B92,C14,C18,C22,C26,C28,C3,C34,C37,C39,C42,C44,C50,C51,C55,C56,C58,C60,C64,C65,C66,C70,C73,C74,C76,C77,C78,C79,C8,C82,C83,C85,C87,D1,D10,D11,D3,D4,D6,D7,D8,D9
`Chr8:4015827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr8:4015872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:4016323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C14
`Chr8:4016347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781902.1

1649 aa

824

1649

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 43-89 aa PF02791 DDT 206-261 aa PF15612 WHIM1 318-352 aa PF00628 PHD 426-467 aa PF24294 Chromo_PTM 1061-1145 aa

XP_057781903.1

1648 aa

824

1648

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 43-89 aa PF02791 DDT 206-261 aa PF15612 WHIM1 318-352 aa PF00628 PHD 426-467 aa PF24294 Chromo_PTM 1060-1144 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781902.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	43	89	7.8e-07	29.5	PTM/DIR17-like, Tudor domain
`XP_057781902.1`	Pfam	`PF02791`	DDT	Family	206	261	4.6e-16	59.4	DDT domain
`XP_057781902.1`	Pfam	`PF15612`	WHIM1	Motif	318	352	3.3e-07	30.5	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057781902.1`	Pfam	`PF00628`	PHD	Domain	426	467	1.7e-07	31.9	PHD-finger
`XP_057781902.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1061	1145	1.2e-31	109.3	Membrane-bound transcription factor PTM, chromo domain-like
`XP_057781903.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	43	89	7.8e-07	29.5	PTM/DIR17-like, Tudor domain
`XP_057781903.1`	Pfam	`PF02791`	DDT	Family	206	261	4.6e-16	59.4	DDT domain
`XP_057781903.1`	Pfam	`PF15612`	WHIM1	Motif	318	352	3.3e-07	30.5	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057781903.1`	Pfam	`PF00628`	PHD	Domain	426	467	1.7e-07	31.9	PHD-finger
`XP_057781903.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1060	1144	1.2e-31	109.3	Membrane-bound transcription factor PTM, chromo domain-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925920.1
GTCCCACCCGACTCACACAGAGTCATGAGTGTGGCGGCGAACTCTTGGTTTAGGGCTTTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTCGGAAAATCTGGTAAGGCTATTTACCATCCCAATTCCCACGATACCATCACGTCGCGAGCTCAATCACTCCTCTCTCTGAGAAAAAGGGGGTTGAGTTACCATTGAGTGTATAATGGAGAGGGTGGTGGTGCCGGAGAGTCGCCGAGGGAGAAAA...

XM_057925919.1
CTTGGTTTAGGGCTTTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTCGGAAAATCTGGTAAGGCTATTTACCATCCCAATTCCCACGATACCATCACGTCGCGAGCTCAATCACTCCTCTCTCTGAGAAAAAGGGGGTTGAGTTACCATTGAGTGTATAATGGAGAGGGTGGTGGTGCCGGAGAGTCGCCGAGGGAGAAAACGGAAGGTAAATAACGTACAAAATGCGGAGGAAAGCGTTGGTG...

CDS

2 records

下载 CDS FASTA

LOC131000143
ATGGAGAGGGTGGTGGTGCCGGAGAGTCGCCGAGGGAGAAAACGGAAGGTAAATAACGTACAAAATGCGGAGGAAAGCGTTGGTGGCAGAAAGAAGGTTATGCATACAAGGTCATTCGAATTGGTTGGAAGATATGTGCAGAAAGAGTTCAAGGGTAGTGGGGTTATTCTAGGAAGGATTATGGGTTATGATTCAGGCTTGTACAGGATAAACTACGAGGGTGATCGTTGTGAGGATTTGATCAGCAGCAAAGTCAAGTC...

Protein

2 records

下载 Protein FASTA

XP_057781902.1
MERVVVPESRRGRKRKVNNVQNAEESVGGRKKVMHTRSFELVGRYVQKEFKGSGVILGRIMGYDSGLYRINYEGDRCEDLISSKVKSLLVEDCDLTDEWPKRKEMLNEFLSSKDVNMDAATATDTRKLGKANPIDSLSLSGMTNSCSADDGIVKVQSDGSGEVDADSSSGSCESARGEEAKLDKEVPLVPPPELPPSSGHIGVPEECVPHLLSVYSFLRSFSVRLFLYPFALDDFVGALNCSVANTLLDSVHVALMCFLK...

XP_057781903.1
MERVVVPESRRGRKRKVNNVQNAEESVGGRKKVMHTRSFELVGRYVQKEFKGSGVILGRIMGYDSGLYRINYEGDRCEDLISSKVKSLLVEDCDLTDEWPKRKEMLNEFLSSKDVNMDAATATDTRKLGKANPIDSLSLSGMTNSCSADDGIVKVQSDGSGEVDADSSSGSCESARGEEAKLDKEVPLVPPPELPPSSGHIGVPEECVPHLLSVYSFLRSFSVRLFLYPFALDDFVGALNCSVANTLLDSVHVALMCFLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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