Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000563`

染色体: Chr08 坐标: 4083765-4087386 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000563`
名称	SmilChr08G000563
描述	splicing factor U2af small subunit B-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4083765 - 4087386 / `+`

ID 对照

NCBI Gene ID	`LOC131000152`
GeneID	`131000152`
locus_tag	`-`
NCBI Name	`LOC131000152`
原始查询	`SmilChr08G000563`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	splicing factor U2af small subunit B-like
产物	splicing factor U2af small subunit B-like
Arabidopsis	`AT5G42820` (U2AF35B) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:834293] identity=68.4; qcov=0.895; evalue=9.77e-130; confidence=high
Rice	`Os09g0491756` (OsC3H60) - identity=68.9; qcov=0.917; evalue=3.31e-131; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0005681 (spliceosomal complex); GO:0030628 (pre-mRNA 3'-splice site binding); GO:0046872 (metal ion binding); GO:0089701 (U2AF complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF00642 (zf-CCCH)
InterPro	-
eggNOG	-
NR	GeneID:131000152

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781912.1`
2	Nuclear speckle	核斑点	0.80000	`XP_057781912.1`
3	Nucleoplasm	核质	0.80000	`XP_057781912.1`
4	Cytoplasm	细胞质	0.20000	`XP_057781912.1`
5	Chromosome	染色体	0.00000	`XP_057781912.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4084131`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B97
`Chr8:4084131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:4085282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:4085318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:4085925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr8:4085957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:4086117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781912.1

315 aa

158

315

zf-CCCH

RRM_1

PF00642 zf-CCCH 14-37 aa PF00076 RRM_1 83-139 aa

XP_057781913.1

315 aa

158

315

zf-CCCH

RRM_1

PF00642 zf-CCCH 14-37 aa PF00076 RRM_1 83-139 aa

XP_057781914.1

315 aa

158

315

zf-CCCH

RRM_1

PF00642 zf-CCCH 14-37 aa PF00076 RRM_1 83-139 aa

XP_057781915.1

315 aa

158

315

zf-CCCH

RRM_1

PF00642 zf-CCCH 14-37 aa PF00076 RRM_1 83-139 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781912.1`	Pfam	`PF00642`	zf-CCCH	Family	14	37	1.8e-11	44.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057781912.1`	Pfam	`PF00076`	RRM_1	Domain	83	139	1e-06	29.2	RNA recognition motif
`XP_057781913.1`	Pfam	`PF00642`	zf-CCCH	Family	14	37	1.8e-11	44.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057781913.1`	Pfam	`PF00076`	RRM_1	Domain	83	139	1e-06	29.2	RNA recognition motif
`XP_057781914.1`	Pfam	`PF00642`	zf-CCCH	Family	14	37	1.8e-11	44.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057781914.1`	Pfam	`PF00076`	RRM_1	Domain	83	139	1e-06	29.2	RNA recognition motif
`XP_057781915.1`	Pfam	`PF00642`	zf-CCCH	Family	14	37	1.8e-11	44.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057781915.1`	Pfam	`PF00076`	RRM_1	Domain	83	139	1e-06	29.2	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925931.1
AATGTTTGGTTGACTTATCCTTTAACTATAAATTTTATTCAATCTTCTCTCAGAATAGAAGTCTCCAGATAATAGGCACTTTCTCTGTCTATCCTCGTTTATAAGTTTATAACCCACCCTCTCTCATCAGCTTCCATTTCTGTAACCCTAATCGCGAGGATCACTCGATCCAAATAAAAAAAATCTTCTCGTTCTGCTTGAAATTTTGCGATGGCGGAGCATTTGGCGTCAATTTTTGGTACAGAGAAGGACAGGGTGAA...

XM_057925929.1
ACTTATCCTTTAACTATAAATTTTATTCAATCTTCTCTCAGAATAGAAGTCTCCAGATAATAGGCACTTTCTCTGTCTATCCTCGTTTATAAGTTTATAACCCACCCTCTCTCATCAGCTTCCATTTCTGTAACCCTAATCGCGAGGATCACTCGATCCAAATAAAAAAAATCTTCTCGTTCTGCTTGAAATTTTGCGATGGCGGAGCATTTGGCGTCAATTTTTGGTACAGAGAAGGACAGGGTGAACTGCCCATTCTA...

CDS

4 records

下载 CDS FASTA

LOC131000152
ATGGCGGAGCATTTGGCGTCAATTTTTGGTACAGAGAAGGACAGGGTGAACTGCCCATTCTACTTCAAGATCGGCGCGTGCAGGCACGGCGACCGCTGCTCCCGCCTCCACACGAAACCGAGCATCAGCCCCACACTCCTGCTCTCCAACATGTACCAGCGCCCCGACATGATTACTCCCGGTGTCGACGCTCAGGGACAGCCGATCGACCCCAAAAAGATGCAGGAACACTTCGAGGATTTTTATGAAGATTTGTTTGA...

Protein

4 records

下载 Protein FASTA

XP_057781912.1
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGQPIDPKKMQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEDACNRGGYCNFMHLKRISRELRHQLFGRRRSRHGHSRSRSPYRHRSYDDRSHGSRSQSRRYDDHDHHDSRRRRKSTSPRSRRGRSRSPGGRRNRSPIREGS...

XP_057781913.1
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGQPIDPKKMQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEHAANALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEEDACNRGGYCNFMHLKRISRELRHQLFGRRRSRHGHSRSRSPYRHRSYDDRSHGSRSQSRRYDDHDHHDSRRRRKSTSPRSRRGRSRSPGGRRNRSPIREGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器