当前解析结果
SmilChr08G000612| 统一新 Gene ID | SmilChr08G000612 |
|---|---|
| 名称 | SmilChr08G000612 |
| 描述 | 11-hydroxysugiol 20-monooxygenase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4555276 - 4557139 / - |
| NCBI Gene ID | LOC131000189 |
|---|---|
| GeneID | 131000189 |
| locus_tag | - |
| NCBI Name | LOC131000189 |
| 原始查询 | SmilChr08G000612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 11-hydroxysugiol 20-monooxygenase-like |
| 产物 | 11-hydroxysugiol 20-monooxygenase-like |
| Arabidopsis | AT2G45550 (CYP76C4)cytochrome P450, family 76, subfamily C, polypeptide 4 [Source:NCBI gene (formerly Entrezgene);Acc:819163] identity=41.4; qcov=1; evalue=7.55e-139; confidence=medium |
| Rice | Os03g0248200- identity=45.4; qcov=0.96; evalue=2.91e-138; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057781955.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057781955.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781955.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781955.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781955.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4555519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,B39,B72 |
Chr8:4555601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B133,B38,B39,B4 |
Chr8:4555669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B4,C67,D2 |
Chr8:4555675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:4555719 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B46 |
Chr8:4555719 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B46 |
Chr8:4555732 |
C |
CAT |
2bp_insertion | frameshift_variant | 1 | B41 |
Chr8:4555732 |
C |
CAT |
2bp_insertion | CDS_variant | 1 | B41 |
Chr8:4555744 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B49,B67,B95,B98 |
Chr8:4555760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B29,B49,B67,B87,B95 |
Chr8:4555789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:4555801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781955.1PF00067
p450 33-480 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781955.1 |
Pfam | PF00067 |
p450 | Domain | 33 | 480 | 2.2e-97 | 327.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。