Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000633`

染色体: Chr08 坐标: 4733093-4736059 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000633`
名称	SmilChr08G000633
描述	uncharacterized protein At2g27730, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4733093 - 4736059 / `+`

ID 对照

NCBI Gene ID	`LOC131000209`
GeneID	`131000209`
locus_tag	`-`
NCBI Name	`LOC131000209`
原始查询	`SmilChr08G000633`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817319]; symbol=AT2G27730; hit=AT2G27730; species=arabidopsis; confidence=medium
产物	copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817319]; symbol=AT2G27730; hit=AT2G27730; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G27730` (AT2G27730) copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:817319] identity=54.5; qcov=1.02; evalue=3.59e-29; confidence=medium
Rice	`Os09g0568900` (IF1-2) - identity=50.9; qcov=0.941; evalue=8.88e-27; confidence=medium
GO	-
KEGG	-
Pfam	PF28671 (UMP2)
InterPro	-
eggNOG	-
NR	GeneID:131000209

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781978.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057781978.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057781978.1`
4	Nucleus	细胞核	0.00000	`XP_057781978.1`
5	Chromosome	染色体	0.00000	`XP_057781978.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4734709`	`GT`	`G`	1bp_deletion	frameshift_variant	10	B104,B19,B77,C24,C33,C43,C53,C56,C62,D1
`Chr8:4735582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781978.1

131 aa

131

UMP2

PF28671 UMP2 13-131 aa

XP_057781979.1

119 aa

119

UMP2

PF28671 UMP2 1-119 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781978.1`	Pfam	`PF28671`	UMP2	Family	13	131	5e-48	162.8	Mitochondrial uncharacterised protein UMP2
`XP_057781979.1`	Pfam	`PF28671`	UMP2	Family	1	119	3.5e-48	163.3	Mitochondrial uncharacterised protein UMP2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925996.1
AGAATTAAGCAAGTGTTGTGTTCGTCCTTTTCTATTTTTAATTTAAGGGCATTCTGATTTTTCAACACACCAGATTCCACACACATATCCAAGAGAAAAATCATCATCATCTCTCTCTGTTCAGCTTCTTCCCGTAATCTCTCTGGCTAGGACAATATTGTGTTTCCATGGCGACTAGAATGGCTGCTAGATATATCTCGCGCAGGCTGTCAAGCAACGGAAAAATCTTCAGTGAGGAGGAGAAGGCTGCTGAAAATATC...

XM_057925995.1
AGACAAGCCTTTCTAATGCGGATACTATGCAACAGACAATATTGTGTTTCCATGGCGACTAGAATGGCTGCTAGATATATCTCGCGCAGGCTGTCAAGCAACGGAAAAATCTTCAGTGAGGAGGAGAAGGCTGCTGAAAATATCTACATCAAGAAAATGGAACAAGAGAAGCTGGATAAACTTGCTCGAAAGGGCCCCGGAGCAGGTGAAGCCCCAGCATCAGGATCTGTAGCTGATGCTAAACCAAGCGGCGGCGGCGG...

CDS

2 records

下载 CDS FASTA

LOC131000209
ATGCGGATACTATGCAACAGACAATATTGTGTTTCCATGGCGACTAGAATGGCTGCTAGATATATCTCGCGCAGGCTGTCAAGCAACGGAAAAATCTTCAGTGAGGAGGAGAAGGCTGCTGAAAATATCTACATCAAGAAAATGGAACAAGAGAAGCTGGATAAACTTGCTCGAAAGGGCCCCGGAGCAGGTGAAGCCCCAGCATCAGGATCTGTAGCTGATGCTAAACCAAGCGGCGGCGGCGGCGGCGGCGGCGGCAG...

LOC131000209
ATGGCGACTAGAATGGCTGCTAGATATATCTCGCGCAGGCTGTCAAGCAACGGAAAAATCTTCAGTGAGGAGGAGAAGGCTGCTGAAAATATCTACATCAAGAAAATGGAACAAGAGAAGCTGGATAAACTTGCTCGAAAGGGCCCCGGAGCAGGTGAAGCCCCAGCATCAGGATCTGTAGCTGATGCTAAACCAAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGTGCCTCTGAAACTCCTACTGTTTCAACTGACAA...

Protein

2 records

下载 Protein FASTA

XP_057781978.1
MRILCNRQYCVSMATRMAARYISRRLSSNGKIFSEEEKAAENIYIKKMEQEKLDKLARKGPGAGEAPASGSVADAKPSGGGGGGGGSGASETPTVSTDKYRNYGVVAGILTMATAFGWYLGSEKKPKEVQD

XP_057781979.1
MATRMAARYISRRLSSNGKIFSEEEKAAENIYIKKMEQEKLDKLARKGPGAGEAPASGSVADAKPSGGGGGGGGSGASETPTVSTDKYRNYGVVAGILTMATAFGWYLGSEKKPKEVQD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

跳转到基因组浏览器