Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000656`

染色体: Chr08 坐标: 4880343-4883230 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000656`
名称	SmilChr08G000656
描述	V-type proton ATPase subunit E-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4880343 - 4883230 / `-`

ID 对照

NCBI Gene ID	`LOC131000231`
GeneID	`131000231`
locus_tag	`-`
NCBI Name	`LOC131000231`
原始查询	`SmilChr08G000656`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	V-type proton ATPase subunit E-like
产物	V-type proton ATPase subunit E-like
Arabidopsis	`AT1G64200` (VHA-E3) vacuolar H+-ATPase subunit E isoform 3 [Source:NCBI gene (formerly Entrezgene);Acc:842725] identity=75; qcov=1.03; evalue=2e-121; confidence=high
Rice	`Os01g0659200` (v-ATP-E) - identity=81.3; qcov=1; evalue=2.3e-133; confidence=high
GO	GO:0033178 (proton-transporting two-sector ATPase complex, catalytic domain); GO:0046961 (proton-transporting ATPase activity, rotational mechanism); GO:1902600 (proton transmembrane transport)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01991 (vATP-synt_E)
InterPro	-
eggNOG	-
NR	GeneID:131000231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782010.1`
2	Cytoplasm	细胞质	0.60000	`XP_057782010.1`
3	Vesicle	囊泡	0.40000	`XP_057782010.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057782011.1`
5	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057782011.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4880655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B46,B66,B78
`Chr8:4881088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B123,C58
`Chr8:4881110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:4881161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,B88
`Chr8:4881443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:4881504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr8:4881613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B99
`Chr8:4882182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:4882243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:4882970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B31,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782010.1

239 aa

120

239

vATP-synt_E

PF01991 vATP-synt_E 16-219 aa

XP_057782011.1

229 aa

114

229

vATP-synt_E

PF01991 vATP-synt_E 16-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782010.1`	Pfam	`PF01991`	vATP-synt_E	Family	16	219	2.1e-63	214.0	ATP synthase (E/31 kDa) subunit
`XP_057782011.1`	Pfam	`PF01991`	vATP-synt_E	Family	16	224	2.3e-66	223.8	ATP synthase (E/31 kDa) subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926028.1
CATGAACATTAGTGAATAATTTATCAATTATTCAGAAAATGGTATATCTGTCACCGTCACCTTGAATACATTCCTTCGGCATCCATTCTATCTCCACGATCTCTACTTCAGTATTCTCCGAAGATAAACGAATTACCCGACCCGAATCATCAACCCGTTCCGCATCCGAAGATGAATGACGCCGATGTATCGAAGCAGATCCAGCAGATGGTCCGCTTCATCCGCCAAGAGGCGGAGGAGAAGGCGAACGAGATCTCCGT...

XM_057926027.1
CATTAGTGAATAATTTATCAATTATTCAGAAAATGGTATATCTGTCACCGTCACCTTGAATACATTCCTTCGGCATCCATTCTATCTCCACGATCTCTACTTCAGTATTCTCCGAAGATAAACGAATTACCCGACCCGAATCATCAACCCGTTCCGCATCCGAAGATGAATGACGCCGATGTATCGAAGCAGATCCAGCAGATGGTCCGCTTCATCCGCCAAGAGGCGGAGGAGAAGGCGAACGAGATCTCCGTCTCCGC...

CDS

2 records

下载 CDS FASTA

LOC131000231
ATGAATGACGCCGATGTATCGAAGCAGATCCAGCAGATGGTCCGCTTCATCCGCCAAGAGGCGGAGGAGAAGGCGAACGAGATCTCCGTCTCCGCCGAGGAAGAATTCAATATCGAGAAGTTGCAGCTAGTGGAAGCCGAGAAGAAGAAGATCAGACAAGAGTATGAGCGCAAAGACAAACAAGTCCAAGTTCGGAAGAAGATTGAGTACTCTATGCAACTGAATGCTTCTCGGCTCAAGGTTCTTCAGGCGCAGGATGA...

Protein

2 records

下载 Protein FASTA

XP_057782010.1
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKDKQVQVRKKIEYSMQLNASRLKVLQAQDDLVNSMKESASKELLHVGGNHRSYEHLLKDLIVQGLLRLKEPSVLLRCRKADLQYVEPILDRAKKEYAEKAKVHSPEIIVDQVYLPPAPSHHNAHDRFCSGGVVLASRDGKIVFENSLDARLEVVFRKKLPEVLHIRLLRENLIRLSIYCSND

XP_057782011.1
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKDKQVQVRKKIEYSMQLNASRLKVLQAQDDLVNSMKESASKELLHVGGNHRSYEHLLKDLIVQGLLRLKEPSVLLRCRKADLQYVEPILDRAKKEYAEKAKVHSPEIIVDQVYLPPAPSHHNAHDRFCSGGVVLASRDGKIVFENSLDARLEVVFRKKLPEIRKSLFGEVAA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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