当前解析结果
SmilChr08G000657| 统一新 Gene ID | SmilChr08G000657 |
|---|---|
| 名称 | SmilChr08G000657 |
| 描述 | uncharacterized SmilChr08G000657 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4883834 - 4889522 / - |
| NCBI Gene ID | LOC131000232 |
|---|---|
| GeneID | 131000232 |
| locus_tag | - |
| NCBI Name | LOC131000232 |
| 原始查询 | SmilChr08G000657 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0515500; species=rice; confidence=high |
| 产物 | hit=Os09g0515500; species=rice; confidence=high |
| Arabidopsis | AT4G11160 (AT4G11160)Translation initiation factor 2, small GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:826717] identity=62; qcov=1.02; evalue=0; confidence=high |
| Rice | Os09g0515500- identity=61.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0003743 (translation initiation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0006413 (translational initiation) |
| KEGG | - |
| Pfam | PF00009 (GTP_EFTU); PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF11987 (IF-2); PF22042 (EF-G_D2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000232 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057782012.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.40000 | XP_057782012.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057782012.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782012.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782012.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4884178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr8:4884223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B40,B52,C18,C22 |
Chr8:4884318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B106 |
Chr8:4884350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C73 |
Chr8:4884401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:4884406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:4884479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr8:4884513 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | A1 |
Chr8:4884513 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | A1 |
Chr8:4884623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr8:4884651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B134,B31,C82 |
Chr8:4884715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,B68,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782012.1PF01926
MMR_HSR1 209-315 aa
PF02421
FeoB_N 209-363 aa
PF00009
GTP_EFTU 209-365 aa
PF22042
EF-G_D2 380-459 aa
PF11987
IF-2 498-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782012.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 209 | 315 | 1e-10 | 42.4 | 50S ribosome-binding GTPase |
XP_057782012.1 |
Pfam | PF02421 |
FeoB_N | Domain | 209 | 363 | 3.5e-07 | 30.6 | Ferrous iron transport protein B |
XP_057782012.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 209 | 365 | 7.1e-36 | 124.3 | Elongation factor Tu GTP binding domain |
XP_057782012.1 |
Pfam | PF22042 |
EF-G_D2 | Domain | 380 | 459 | 7.5e-22 | 78.0 | Elongation factor G domain 2 |
XP_057782012.1 |
Pfam | PF11987 |
IF-2 | Domain | 498 | 607 | 2.8e-31 | 108.6 | Translation-initiation factor 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。