当前解析结果
SmilChr08G000660| 统一新 Gene ID | SmilChr08G000660 |
|---|---|
| 名称 | SmilChr08G000660 |
| 描述 | transcription factor E2FB-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4894143 - 4900359 / - |
| NCBI Gene ID | LOC130997978 |
|---|---|
| GeneID | 130997978 |
| locus_tag | - |
| NCBI Name | LOC130997978 |
| 原始查询 | SmilChr08G000660 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor E2FB-like |
| 产物 | transcription factor E2FB-like |
| Arabidopsis | AT5G22220 (E2F1)E2F transcription factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:832283] identity=52.9; qcov=0.796; evalue=7.08e-144; confidence=high |
| Rice | Os02g0537500 (OsE2F1)- identity=56.4; qcov=0.656; evalue=5.93e-132; confidence=high |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity); GO:0090575 (RNA polymerase II transcription regulator complex) |
| KEGG | - |
| Pfam | PF02319 (WHD_E2F_TDP); PF16421 (E2F_CC-MB) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997978 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779400.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779400.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779400.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779400.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779400.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4894489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,B9 |
Chr8:4894531 |
GT |
G |
1bp_deletion | frameshift_variant | 45 | A10,A11,A20,A23,A4,B111,B112,B119,B120,B133,B135,B136,B17,B27,B3,B30,B41,B5,B67,B7,B73,B81,B82,B84,B91,B93,B98,C13,C14,C18,C28,C3,C32,C37,C41,C49,C53,C59,C68,C7,C74,C76,C81,C83,D9 |
Chr8:4894682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:4895218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B16,C9 |
Chr8:4895890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr8:4896053 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B117,B2,C12 |
Chr8:4896060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B134,B31 |
Chr8:4896709 |
C |
CTT |
2bp_insertion | frameshift_variant | 20 | A7,B1,B105,B18,B22,B30,B40,B56,B58,B6,B67,B81,B99,C13,C21,C32,C52,C65,C71,C75 |
Chr8:4896712 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A14,B134,B71,C17,C30 |
Chr8:4896712 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A14,B134,B71,C17,C30 |
Chr8:4896720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B40,B58,B81,C21,C75 |
Chr8:4897201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779400.1PF02319
WHD_E2F_TDP 252-315 aa
PF16421
E2F_CC-MB 331-431 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779400.1 |
Pfam | PF02319 |
WHD_E2F_TDP | Domain | 252 | 315 | 1.5e-27 | 95.8 | E2F/DP family winged-helix DNA-binding domain |
XP_057779400.1 |
Pfam | PF16421 |
E2F_CC-MB | Domain | 331 | 431 | 4.6e-34 | 117.1 | E2F transcription factor CC-MB domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。