Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000668`

染色体: Chr08 坐标: 4955486-4958273 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000668`
名称	SmilChr08G000668
描述	uncharacterized SmilChr08G000668
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4955486 - 4958273 / `-`

ID 对照

NCBI Gene ID	`LOC131000244`
GeneID	`131000244`
locus_tag	`-`
NCBI Name	`LOC131000244`
原始查询	`SmilChr08G000668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534]; symbol=AT5G64130; hit=AT5G64130; species=arabidopsis; confidence=high
产物	cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534]; symbol=AT5G64130; hit=AT5G64130; species=arabidopsis; confidence=high
Arabidopsis	`AT5G64130` (AT5G64130) cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534] identity=83.5; qcov=0.945; evalue=5.97e-56; confidence=high
Rice	`Os05g0566600` - identity=71.4; qcov=0.771; evalue=9.88e-38; confidence=medium
GO	GO:0004864 (protein phosphatase inhibitor activity); GO:0005737 (cytoplasm); GO:0035308 (GO:0035308)
KEGG	-
Pfam	PF04667 (Endosulfine)
InterPro	-
eggNOG	-
NR	GeneID:131000244

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782025.1`
2	Cytosol	细胞质基质	1.00000	`XP_057782025.1`
3	Nucleoplasm	核质	0.80000	`XP_057782025.1`
4	Nucleus	细胞核	0.60000	`XP_057782025.1`
5	Chromosome	染色体	0.00000	`XP_057782025.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4955728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr8:4955960`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B36
`Chr8:4955960`	`C`	`CA`	1bp_insertion	CDS_variant	1	B36
`Chr8:4957300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,A23,B31,C45
`Chr8:4957422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782025.1

113 aa

113

Endosulfine

PF04667 Endosulfine 25-93 aa

XP_057782026.1

109 aa

109

Endosulfine

PF04667 Endosulfine 25-93 aa

XP_057782027.1

109 aa

109

Endosulfine

PF04667 Endosulfine 25-93 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782025.1`	Pfam	`PF04667`	Endosulfine	Family	25	93	5.5e-23	81.5	cAMP-regulated phosphoprotein/endosulfine conserved region
`XP_057782026.1`	Pfam	`PF04667`	Endosulfine	Family	25	93	4.9e-23	81.7	cAMP-regulated phosphoprotein/endosulfine conserved region
`XP_057782027.1`	Pfam	`PF04667`	Endosulfine	Family	25	93	4.9e-23	81.7	cAMP-regulated phosphoprotein/endosulfine conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926044.1
TTCAAGATCCCTCTTTTATCCTTCTTGAGCCCTAATTCCCCCTTCTCCCTCGTCTGCATCTTCAATCCCAGAGTTTGGGACACAGCAGCAGATTCAAGAAAAGTGTTGTGGCAAGAATATGTCAGGCGCCGAGGAAGAAAGAGAACAAGGGGAAATCGTCATGGAAGATGCTGAAAAGTCCCCTCCAACAGCACAACAGGAGGAGGCGGTTGTCAAGAAAAAATACGGAGGAATGATGCCTAAGAAACCACCGCTAATTT...

XM_057926042.1
CCCTCTTTTATCCTTCTTGAGCCCTAATTCCCCCTTCTCCCTCGTCTGCATCTTCAATCCCAGAGTTTGGGACACAGCAGCAGATTCAAGAAAAGTGTTGTGGCAAGAATATGTCAGGCGCCGAGGAAGAAAGAGAACAAGGGGAAATCGTCATGGAAGATGCTGAAAAGTCCCCTCCAACAGCACAACAGGAGGAGGCGGTTGTCAAGAAAAAATACGGAGGAATGATGCCTAAGAAACCACCGCTAATTTCTAAGGAT...

CDS

3 records

下载 CDS FASTA

LOC131000244
ATGTCAGGCGCCGAGGAAGAAAGAGAACAAGGGGAAATCGTCATGGAAGATGCTGAAAAGTCCCCTCCAACAGCACAACAGGAGGAGGCGGTTGTCAAGAAAAAATACGGAGGAATGATGCCTAAGAAACCACCGCTAATTTCTAAGGATCATGAACGAGCCTATTTTGACTCCGCTGATTGGGCATTGGGAAAGCAAGGTGCAGCGAAGCCCAAAGGACCACTTGAGGCTCTGCGGCCAAAGTTACAGCCTACACAACA...

Protein

3 records

下载 Protein FASTA

XP_057782025.1
MSGAEEEREQGEIVMEDAEKSPPTAQQEEAVVKKKYGGMMPKKPPLISKDHERAYFDSADWALGKQGAAKPKGPLEALRPKLQPTQQQTRYRKSPYAPPEGEGMCGSFSFCNS

XP_057782026.1
MSGAEEEREQGEIVMEDAEKSPPTAQQEEAVVKKKYGGMMPKKPPLISKDHERAYFDSADWALGKQGAAKPKGPLEALRPKLQPTQQQTRYRKSPYAPPEGEEGHVPLS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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