当前解析结果
SmilChr08G000672| 统一新 Gene ID | SmilChr08G000672 |
|---|---|
| 名称 | SmilChr08G000672 |
| 描述 | aluminum-activated malate transporter 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4984837 - 4988736 / - |
| NCBI Gene ID | LOC131000249 |
|---|---|
| GeneID | 131000249 |
| locus_tag | - |
| NCBI Name | LOC131000249 |
| 原始查询 | SmilChr08G000672 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aluminum-activated malate transporter 2-like |
| 产物 | aluminum-activated malate transporter 2-like |
| Arabidopsis | AT1G08440 (AT1G08440)aluminum activated malate transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:837364] identity=54.9; qcov=0.892; evalue=5.25e-151; confidence=high |
| Rice | Os04g0417000 (OsALMT1)- identity=48.3; qcov=0.97; evalue=9.26e-134; confidence=high |
| GO | GO:0009705 (plant-type vacuole membrane); GO:0015743 (malate transport) |
| KEGG | - |
| Pfam | PF04632 (FUSC); PF11744 (ALMT); PF13515 (FUSC_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000249 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057782036.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057782036.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782036.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782036.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782036.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4985076 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C54 |
Chr8:4985081 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C54 |
Chr8:4985081 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C54 |
Chr8:4985283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:4986734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:4987027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:4987270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B106,B12,B30,B52 |
Chr8:4987632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr8:4987633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782036.1PF11744
ALMT 38-364 aa
PF13515
FUSC_2 76-200 aa
PF04632
FUSC 77-275 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782036.1 |
Pfam | PF11744 |
ALMT | Family | 38 | 364 | 2.4e-136 | 456.1 | Aluminium activated malate transporter |
XP_057782036.1 |
Pfam | PF13515 |
FUSC_2 | Family | 76 | 200 | 4e-08 | 34.1 | Fusaric acid resistance protein-like |
XP_057782036.1 |
Pfam | PF04632 |
FUSC | Family | 77 | 275 | 1.5e-07 | 31.2 | Fusaric acid resistance protein family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。