Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000673`

染色体: Chr08 坐标: 4989685-4995494 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000673`
名称	SmilChr08G000673
描述	transcription factor LHW-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4989685 - 4995494 / `-`

ID 对照

NCBI Gene ID	`LOC131000247`
GeneID	`131000247`
locus_tag	`-`
NCBI Name	`LOC131000247`
原始查询	`SmilChr08G000673`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor LHW-like
产物	transcription factor LHW-like
Arabidopsis	`AT2G27230` (LHW) transcription factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:817265] identity=42.3; qcov=0.968; evalue=4.2e-146; confidence=medium
Rice	`Os11g0158500` (OsbHLH151) - identity=49.5; qcov=0.58; evalue=2.4e-110; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF14215 (bHLH-MYC_N); PF23176 (bHLH_LHW)
InterPro	-
eggNOG	-
NR	GeneID:131000247

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782031.1`
2	Chromosome	染色体	0.00000	`XP_057782031.1`
3	Centromere	着丝粒	0.00000	`XP_057782031.1`
4	Chromatin	染色质	0.00000	`XP_057782031.1`
5	Telomere	端粒	0.00000	`XP_057782031.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4990143`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B103
`Chr8:4990985`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B58
`Chr8:4990985`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B58
`Chr8:4991220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr8:4991289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:4991403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:4991421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:4991457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:4991458`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C38
`Chr8:4991458`	`GA`	`G`	1bp_deletion	CDS_variant	1	C38
`Chr8:4991498`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:4991963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B98,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782031.1

801 aa

400

801

bHLH-MYC_N

bHLH_LHW

PF14215 bHLH-MYC_N 6-168 aa PF23176 bHLH_LHW 600-661 aa

XP_057782032.1

799 aa

400

799

bHLH-MYC_N

bHLH_LHW

PF14215 bHLH-MYC_N 6-168 aa PF23176 bHLH_LHW 600-660 aa

XP_057782033.1

721 aa

360

721

bHLH-MYC_N

bHLH_LHW

PF14215 bHLH-MYC_N 1-88 aa PF23176 bHLH_LHW 520-581 aa

XP_057782034.1

721 aa

360

721

bHLH-MYC_N

bHLH_LHW

PF14215 bHLH-MYC_N 1-88 aa PF23176 bHLH_LHW 520-581 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782031.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	6	168	9.4e-30	105.0	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057782031.1`	Pfam	`PF23176`	bHLH_LHW	Domain	600	661	1.3e-36	125.1	Transcription factor LHW bHLH domain
`XP_057782032.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	6	168	9.4e-30	105.0	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057782032.1`	Pfam	`PF23176`	bHLH_LHW	Domain	600	660	5.5e-36	123.1	Transcription factor LHW bHLH domain
`XP_057782033.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	1	88	1.9e-15	58.3	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057782033.1`	Pfam	`PF23176`	bHLH_LHW	Domain	520	581	1.1e-36	125.3	Transcription factor LHW bHLH domain
`XP_057782034.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	1	88	1.9e-15	58.3	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057782034.1`	Pfam	`PF23176`	bHLH_LHW	Domain	520	581	1.1e-36	125.3	Transcription factor LHW bHLH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926049.1
GTGTTTCGTTTTTTTTATCAATCTTCTTATTTTGAAGATCAAATGAAACAGTTATTGACTGAACCTATTCCAAGATTCTTTCTACAGTCTCCAAACACCCCACCCTCAAAATTAGTTGAATAATATCAGACAAAGCTGACACCCCAACCCCCTCCCAGTTTTCCCATTACAAATTCTAGTATTTGATTATTAATTAATGATGGAATGGAAAAAGTAAATATCGCATTTGGTGGTAAGAAACGATCTTGTCACAGTGGCAT...

XM_057926048.1
GTGTTTCGTTTTTTTTATCAATCTTCTTATTTTGAAGATCAAATGAAACAGTTATTGACTGAACCTATTCCAAGATTCTTTCTACAGTCTCCAAACACCCCACCCTCAAAATTAGTTGAATAATATCAGACAAAGCTGACACCCCAACCCCCTCCCAGTTTTCCCATTACAAATTCTAGTATTTGATTATTAATTAATGATGGAATGGAAAAAGTAAATATCGCATTTGGTGGTAAGAAACGATCTTGTCACAGTGGCAT...

CDS

4 records

下载 CDS FASTA

LOC131000247
ATGGGCTACTTGTTTAAAGAGGCTTTGAAGACTCTTTGTGGAGTCAACCAGTGGTCCTATGCTGTCTTTTGGAAGACTGGTTCCCAAAATCCCAACCTTTTAATATGGGAAGAATGTTATTATGAACCCGCATCTTGTTATGGACGTCCCCGGATTTCCGGCAATGGGACTTCAAGTGAAACTCCGAATTTACAACATGGTGTTCCCGGAGGGAACAGGGTGCATTTGCTTGTGAACAAGATGATGGCGGACAATCATAT...

Protein

4 records

下载 Protein FASTA

XP_057782031.1
MGYLFKEALKTLCGVNQWSYAVFWKTGSQNPNLLIWEECYYEPASCYGRPRISGNGTSSETPNLQHGVPGGNRVHLLVNKMMADNHINVIGEGLVGRVAFTGNQQWILSENYYRETHPPEVLKEVCLQFSAGMQTVAVVPILPHGVAQFGSYLPIAEDVGFVNGVMSLIAELGCVPGVLQSANHEANELAPKVGFPLHPGYSAPQESPLESNMIGASSFFADSLNYVGCSAQSSAFDSHTPFSLFGEIQNEMQSSIAPFQ...

XP_057782032.1
MGYLFKEALKTLCGVNQWSYAVFWKTGSQNPNLLIWEECYYEPASCYGRPRISGNGTSSETPNLQHGVPGGNRVHLLVNKMMADNHINVIGEGLVGRVAFTGNQQWILSENYYRETHPPEVLKEVCLQFSAGMQTVAVVPILPHGVAQFGSYLPIAEDVGFVNGVMSLIAELGCVPGVLQSANHEANELAPKVGFPLHPGYSAPQESPLESNMIGASSFFADSLNYVGCSAQSSAFDSHTPFSLFGEIQNEMQSSIAPFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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