Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000677`

染色体: Chr08 坐标: 5040013-5042279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000677`
名称	SmilChr08G000677
描述	uncharacterized SmilChr08G000677
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5040013 - 5042279 / `+`

ID 对照

NCBI Gene ID	`LOC131000253`
GeneID	`131000253`
locus_tag	`-`
NCBI Name	`LOC131000253`
原始查询	`SmilChr08G000677`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	evolutionarily conserved C-terminal region 6 [Source:NCBI gene (formerly Entrezgene);Acc:820996]; symbol=ECT6; hit=AT3G17330; species=arabidopsis; confidence=weak
产物	evolutionarily conserved C-terminal region 6 [Source:NCBI gene (formerly Entrezgene);Acc:820996]; symbol=ECT6; hit=AT3G17330; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G17330` (ECT6) evolutionarily conserved C-terminal region 6 [Source:NCBI gene (formerly Entrezgene);Acc:820996] identity=51.5; qcov=0.28; evalue=2.77e-44; confidence=weak
Rice	`Os03g0317000` - identity=51.3; qcov=0.272; evalue=3.83e-41; confidence=weak
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization)
KEGG	-
Pfam	PF03478 (Beta-prop_KIB1-4); PF04146 (YTH); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131000253

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782040.1`
2	Cytoplasm	细胞质	1.00000	`XP_057782040.1`
3	Chromosome	染色体	0.00000	`XP_057782040.1`
4	Centromere	着丝粒	0.00000	`XP_057782040.1`
5	Chromatin	染色质	0.00000	`XP_057782040.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5040195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:5040296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr8:5040304`	`T`	`TCC`	2bp_insertion	frameshift_variant	123	A11,A16,A19,A21,A3,A4,A5,A7,A8,A9,B1,B10,B103,B105,B108,B109,B111,B112,B113,B115,B118,B120,B121,B122,B124,B126,B128,B132,B133,B134,B137,B139,B16,B19,B20,B21,B22,B23,B27,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B44,B47,B52,B53,B54,B55,B56,B58,B59,B67,B7,B70,B71,B76,B78,B80,B87,B89,B90,B92,B95,B96,B97,C13,C18,C19,C2,C20,C21,C22,C23,C25,C26,C29,C30,C32,C33,C34,C35,C36,C38,C4,C41,C42,C44,C45,C46,C49,C52,C55,C57,C58,C59,C61,C62,C63,C64,C65,C66,C68,C72,C76,C77,C79,C80,C83,C85,D1,D2,D6,D9
`Chr8:5040305`	`TTA`	`T`	2bp_deletion	frameshift_variant	123	A11,A16,A19,A21,A3,A4,A5,A7,A8,A9,B1,B10,B103,B105,B108,B109,B111,B112,B113,B115,B118,B120,B121,B122,B124,B126,B128,B132,B133,B134,B137,B139,B16,B19,B20,B21,B22,B23,B27,B3,B30,B31,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B44,B47,B52,B53,B54,B55,B56,B58,B59,B67,B7,B70,B71,B76,B78,B80,B87,B89,B90,B92,B95,B96,B97,C13,C18,C19,C2,C20,C21,C22,C23,C25,C26,C29,C30,C32,C33,C34,C35,C36,C38,C4,C41,C42,C44,C45,C46,C49,C52,C55,C57,C58,C59,C61,C62,C63,C64,C65,C66,C68,C72,C76,C77,C79,C80,C83,C85,D1,D2,D6,D9
`Chr8:5040339`	`C`	`CCA`	2bp_insertion	frameshift_variant	1	C53
`Chr8:5040339`	`C`	`CCA`	2bp_insertion	CDS_variant	1	C53
`Chr8:5040340`	`CCA`	`C`	2bp_deletion	frameshift_variant	1	B4
`Chr8:5040340`	`CCA`	`C`	2bp_deletion	CDS_variant	1	B4
`Chr8:5040380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr8:5040399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:5040425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B67,B93,C28
`Chr8:5040474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782040.1

574 aa

287

574

FBA_3

Beta-prop_KIB1-4

FBA_1

YTH

PF08268 FBA_3 20-206 aa PF03478 Beta-prop_KIB1-4 40-208 aa PF07734 FBA_1 50-204 aa PF04146 YTH 432-560 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782040.1`	Pfam	`PF08268`	FBA_3	Repeat	20	206	3.9e-11	43.3	F-box associated beta propeller domain
`XP_057782040.1`	Pfam	`PF03478`	Beta-prop_KIB1-4	Repeat	40	208	5.8e-08	33.3	KIB1-4 beta-propeller
`XP_057782040.1`	Pfam	`PF07734`	FBA_1	Repeat	50	204	1.2e-17	64.6	F-box associated beta propeller domain
`XP_057782040.1`	Pfam	`PF04146`	YTH	Domain	432	560	5.3e-25	88.5	YT521-B-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926057.1
CTCTTTCAAAACACGAAAAGAACAATGCATGAGTATAATTTTTGATGCGTTAGGTTAGGGTTCGTGCCCTTTCTTCTTCTTCTTCTACATCTATCAATTTTTGATCGACGATGAGTAATTCCGACGAGAAACGGCTTCTTGTGAACAGTAACAAAGGAAAGCCCGGTATGTATCATTTAACTGCTCTTTCTCCGCGAGATTTATCTGAAATCTCTGAAGATTGTTTCGACCTCCCTTTTTCGAATCCAAAGGAACTAATT...

CDS

1 records

下载 CDS FASTA

LOC131000253
ATGAGTAATTCCGACGAGAAACGGCTTCTTGTGAACAGTAACAAAGGAAAGCCCGGTATGTATCATTTAACTGCTCTTTCTCCGCGAGATTTATCTGAAATCTCTGAAGATTGTTTCGACCTCCCTTTTTCGAATCCAAAGGAACTAATTGGTTCCAACAGTTGCGGGGGTTTGCTGTTTTTTTACGATGATAGTGGCCACAGTTATCTTTGCAACCCCACAACCAAACAGATTCAGTTCTTTCCTCCCAAGGAAGCCTC...

Protein

1 records

下载 Protein FASTA

XP_057782040.1
MSNSDEKRLLVNSNKGKPGMYHLTALSPRDLSEISEDCFDLPFSNPKELIGSNSCGGLLFFYDDSGHSYLCNPTTKQIQFFPPKEASQNPNYDTRLAGACVGYDSKSNDYKILRIWDRKYWPSRTRSKERSFELYSLSSDSWDEISSDDAPKCTSGIENVIYARAKFYWISVRDSRVVSFDCSKKSFSYLSLPRKADDSYFNLVKFNDDDSLGIAFCGPRGANHKVPLHLAFGGEPGFYFEVWVWREKWDKMFNVSLGGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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