当前解析结果
SmilChr08G000686| 统一新 Gene ID | SmilChr08G000686 |
|---|---|
| 名称 | SmilChr08G000686 |
| 描述 | bZIP transcription factor 44-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5094141 - 5095254 / + |
| NCBI Gene ID | LOC131000263 |
|---|---|
| GeneID | 131000263 |
| locus_tag | - |
| NCBI Name | LOC131000263 |
| 原始查询 | SmilChr08G000686 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bZIP transcription factor 44-like |
| 产物 | bZIP transcription factor 44-like |
| Arabidopsis | AT1G75390 (bZIP44)basic leucine-zipper 44 [Source:NCBI gene (formerly Entrezgene);Acc:843875] identity=47.8; qcov=0.738; evalue=2.24e-21; confidence=medium |
| Rice | Os02g0132500 (OsbZIP14)- identity=58.7; qcov=0.516; evalue=2.2e-18; confidence=low |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00170 (bZIP_1); PF07716 (bZIP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000263 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782055.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782055.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782055.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782055.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782055.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5094410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B48,C15,C79 |
Chr8:5094464 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B3,B70,C62 |
Chr8:5094466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B133,B47,B48,C15,C56 |
Chr8:5094471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C36 |
Chr8:5094481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B103 |
Chr8:5094532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B42,B47,C13 |
Chr8:5094563 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B43 |
Chr8:5094563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr8:5094568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr8:5094581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr8:5094585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B31,B34,C38,C50 |
Chr8:5094587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782055.1PF00170
bZIP_1 3-49 aa
PF07716
bZIP_2 5-52 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782055.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 3 | 49 | 1.4e-11 | 45.1 | bZIP transcription factor |
XP_057782055.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 5 | 52 | 1.8e-08 | 35.0 | Basic region leucine zipper |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。