Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000703`

染色体: Chr08 坐标: 5228653-5236710 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000703`
名称	SmilChr08G000703
描述	indole-3-acetaldehyde oxidase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5228653 - 5236710 / `+`

ID 对照

NCBI Gene ID	`LOC131000280`
GeneID	`131000280`
locus_tag	`-`
NCBI Name	`LOC131000280`
原始查询	`SmilChr08G000703`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	indole-3-acetaldehyde oxidase-like
产物	indole-3-acetaldehyde oxidase-like
Arabidopsis	`AT3G43600` (AAO2) aldehyde oxidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823457] identity=58.9; qcov=1; evalue=0; confidence=high
Rice	`Os07g0281700` (AO) - identity=55.5; qcov=1.02; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0016491 (oxidoreductase activity); GO:0051537 (2 iron, 2 sulfur cluster binding); GO:0071949 (FAD binding)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00111 (Fer2); PF00941 (FAD_binding_5); PF01315 (Ald_Xan_dh_C); PF01799 (Fer2_2); PF02738 (MoCoBD_1); PF03450 (CO_deh_flav_C); PF20256 (MoCoBD_2)
InterPro	-
eggNOG	-
NR	GeneID:131000280

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782089.1`
2	Cytosol	细胞质基质	0.60000	`XP_057782089.1`
3	Nucleus	细胞核	0.20000	`XP_057782089.1`
4	Chromosome	染色体	0.00000	`XP_057782089.1`
5	Centromere	着丝粒	0.00000	`XP_057782089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5228864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B12,C55,C64,C66,C82
`Chr8:5228884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr8:5228935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr8:5228942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr8:5230908`	`AC`	`A`	1bp_deletion	frameshift_variant	35	A1,A7,A8,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B73,B79,B9,B91,C11,C17,C19,C2,C24,C35,C41,C43,C58,C67,C80,C9,D2
`Chr8:5230910`	`GC`	`G`	1bp_deletion	frameshift_variant	35	A1,A7,A8,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B73,B79,B9,B91,C11,C17,C19,C2,C24,C35,C41,C43,C58,C67,C80,C9,D2
`Chr8:5230925`	`G`	`GA`	1bp_insertion	frameshift_variant	33	A1,A7,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B73,B79,B9,B91,C11,C17,C19,C2,C24,C35,C41,C43,C67,C80,C9,D2
`Chr8:5230927`	`GCC`	`G`	2bp_deletion	frameshift_variant	31	A1,A7,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B79,B9,B91,C17,C19,C2,C24,C35,C41,C43,C67,C80,C9,D2
`Chr8:5230930`	`GCC`	`G`	2bp_deletion	frameshift_variant	31	A1,A7,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B79,B9,B91,C17,C19,C2,C24,C35,C41,C43,C67,C80,C9,D2
`Chr8:5230934`	`C`	`CTG`	2bp_insertion	frameshift_variant	31	A1,A7,B109,B120,B123,B126,B138,B139,B18,B22,B27,B4,B54,B58,B69,B70,B71,B79,B9,B91,C17,C19,C2,C24,C35,C41,C43,C67,C80,C9,D2
`Chr8:5230936`	`GCC`	`G`	2bp_deletion	frameshift_variant	2	B73,C11
`Chr8:5230936`	`GCC`	`G`	2bp_deletion	CDS_variant	2	B73,C11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782089.1

1331 aa

666

1331

Fer2

Fer2_2

FAD_binding_5

CO_deh_flav_C

Ald_Xan_dh_C

MoCoBD_1

MoCoBD_2

PF00111 Fer2 12-79 aa PF01799 Fer2_2 90-179 aa PF00941 FAD_binding_5 235-406 aa PF03450 CO_deh_flav_C 420-524 aa PF01315 Ald_Xan_dh_C 574-683 aa PF02738 MoCoBD_1 718-947 aa PF20256 MoCoBD_2 976-1238 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782089.1`	Pfam	`PF00111`	Fer2	Domain	12	79	2.7e-08	34.3	2Fe-2S iron-sulfur cluster binding domain
`XP_057782089.1`	Pfam	`PF01799`	Fer2_2	Domain	90	179	6e-23	81.5	[2Fe-2S] binding domain
`XP_057782089.1`	Pfam	`PF00941`	FAD_binding_5	Domain	235	406	2.4e-36	125.9	FAD binding domain in molybdopterin dehydrogenase
`XP_057782089.1`	Pfam	`PF03450`	CO_deh_flav_C	Domain	420	524	2.9e-20	73.0	CO dehydrogenase flavoprotein C-terminal domain
`XP_057782089.1`	Pfam	`PF01315`	Ald_Xan_dh_C	Domain	574	683	2.2e-29	102.7	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
`XP_057782089.1`	Pfam	`PF02738`	MoCoBD_1	Domain	718	947	6.9e-78	261.8	Molybdopterin cofactor-binding domain
`XP_057782089.1`	Pfam	`PF20256`	MoCoBD_2	Domain	976	1238	2.4e-69	234.7	Molybdopterin cofactor-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009093696.1
GCGTGAGGTGATCAACGCATTTATGCAAAGCTCGATTTAGGCAGCGTGGTCTTAAAAGTCACAAGTGACGGCTGTGAATTTTGAATATATATATATATATATATATATATATATATATATTTCAGCACCCATTGATGGCTTAATTTATAAGAGGAAAATGGAGAAAAGAGATGAGTGTGGTGTCGTGTTTGAGGTGAACGGCGAGAGATTTGCGGTGGCCGAAGTTGATCCCTCCACCACTTTGCTCGACTTCTTGCGCT...

XR_009093697.1
TATATATATATTTCAGCACCCATTGATGGCTTAATTTATAAGAGGAAAATGGAGAAAAGAGATGAGTGTGGTGTCGTGTTTGAGGTGAACGGCGAGAGATTTGCGGTGGCCGAAGTTGATCCCTCCACCACTTTGCTCGACTTCTTGCGCTCCGCCACTCCTTTCAAGAGCCTCAAGCTCGGCTGCGGCGAAGGTGGGTGTGGAGCTTGTGTGGTGGTGGTGTCGAGATTCAACCCTGTGCTTAAGCAAAGAGAGATTTT...

CDS

1 records

下载 CDS FASTA

LOC131000280
ATGGAGAAAAGAGATGAGTGTGGTGTCGTGTTTGAGGTGAACGGCGAGAGATTTGCGGTGGCCGAAGTTGATCCCTCCACCACTTTGCTCGACTTCTTGCGCTCCGCCACTCCTTTCAAGAGCCTCAAGCTCGGCTGCGGCGAAGGTGGGTGTGGAGCTTGTGTGGTGGTGGTGTCGAGATTCAACCCTGTGCTTAAGCAAAGAGAGATTTTCAGCGTGAGTTCTTGCCTGACTCTTGTCTGCAGCGTCAATGGCTTCTC...

Protein

1 records

下载 Protein FASTA

XP_057782089.1
MEKRDECGVVFEVNGERFAVAEVDPSTTLLDFLRSATPFKSLKLGCGEGGCGACVVVVSRFNPVLKQREIFSVSSCLTLVCSVNGFSITTSEGLGNSKDGFHPIHQRFAGFHASQCGFCTPGFCMSFFSALANADATPPHAPPQPPRGFSSLTLSQAQTAITGNLCRCTGYRPIADACKSFAADVDLEDLGINSFWKRGEARVSKLPPYNPEEDVCPYVQQCREECESILNSERLSWFTPVSLEELGSLLITGDGASVKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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