Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000710

染色体: Chr08 坐标: 5271259-5274246 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000710
名称SmilChr08G000710
描述uncharacterized SmilChr08G000710
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向5271259 - 5274246 / -

ID 对照

NCBI Gene IDLOC131000285
GeneID131000285
locus_tag-
NCBI NameLOC131000285
原始查询SmilChr08G000710

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os07g0190600; species=rice; confidence=weak
产物hit=Os07g0190600; species=rice; confidence=weak
ArabidopsisAT2G05642 (AT2G05642)
Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430]
identity=21.9; qcov=0.662; evalue=8.57e-16; confidence=weak
RiceOs07g0190600
-
identity=24.7; qcov=0.594; evalue=1.27e-20; confidence=weak
GOGO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006281 (DNA repair); GO:0006310 (DNA recombination)
KEGG-
PfamPF08646 (Rep_fac-A_C)
InterPro-
eggNOG-
NRGeneID:131000285

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057782098.1
2 Chromosome 染色体 0.20000 XP_057782098.1
3 Centromere 着丝粒 0.00000 XP_057782098.1
4 Chromatin 染色质 0.00000 XP_057782098.1
5 Telomere 端粒 0.00000 XP_057782098.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782098.1
614 aa
N
1
307
614
Rep_fac-A_C
C
PF08646 Rep_fac-A_C 243-352 aa
XP_057782099.1
606 aa
N
1
303
606
Rep_fac-A_C
C
PF08646 Rep_fac-A_C 235-344 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782098.1 Pfam PF08646 Rep_fac-A_C Domain 243 352 8e-11 42.6 Replication factor-A C terminal domain
XP_057782099.1 Pfam PF08646 Rep_fac-A_C Domain 235 344 7.8e-11 42.7 Replication factor-A C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057926116.1
CATAACAATTCACATGTTAATATATTTGTAGGGAACACGGATACAATTGAGTGTGCCAAACAAACTAACCAAAATGTTTGGAAACAAACTTAAAGAAGGTTTGGTTTATCAAATAATGAATTTCATGGTCAAGAGAAATGGTACGAAGTGGAAGGTGACAGATCATGTGCATCGTCTTGAACTCACGCCAAAAACCATGATTTCGGAAGTATTTCCAAAGTGTTTTCCAAACTATAAGTTCTCATTCAAATCATTTGAGG...
XM_057926115.1
CATAACAATTCACATGTTAATATATTTGTAGGGAACACGGATACAATTGAGTGTGCCAAACAAACTAACCAAAATGTTTGGAAACAAACTTAAAGAAGGTTTGGTTTATCAAATAATGAATTTCATGGTCAAGAGAAATGGTACGAAGTGGAAGGTGACAGATCATGTGCATCGTCTTGAACTCACGCCAAAAACCATGATTTCGGAAGTATTTCCAAAGTGTTTTCCAAACTATAAGTTCTCATTCAAATCATTTGAGG...

CDS

2 records

下载 CDS FASTA
LOC131000285
ATGTTTGGAAACAAACTTAAAGAAGGTTTGGTTTATCAAATAATGAATTTCATGGTCAAGAGAAATGGTACGAAGTGGAAGGTGACAGATCATGTGCATCGTCTTGAACTCACGCCAAAAACCATGATTTCGGAAGTATTTCCAAAGTGTTTTCCAAACTATAAGTTCTCATTCAAATCATTTGAGGATATTTCTTCAATTCAGACTACTGATTCAGTAGGAATGTTTGATGTTATTGGAGTGATAGCAGGGAAAGGGTT...
LOC131000285
ATGTTTGGAAACAAACTTAAAGAAGGTTTGGTTTATCAAATAATGAATTTCATGGTCAAGAGAAATGGTACGAAGTGGAAGGTGACAGATCATGTGCATCGTCTTGAACTCACGCCAAAAACCATGATTTCGGAAGTATTTCCAAAGTGTTTTCCAAACTATAAGTTCTCATTCAAATCATTTGAGGATATTTCTTCAATTCAGACTACTGATTCAGTAGGAATGTTTGATGTTATTGGAGTGATAGCAGGGAAAGGGTT...

Protein

2 records

下载 Protein FASTA
XP_057782098.1
MFGNKLKEGLVYQIMNFMVKRNGTKWKVTDHVHRLELTPKTMISEVFPKCFPNYKFSFKSFEDISSIQTTDSVGMFDVIGVIAGKGFVKNDSESKMVELKLEDQNHNQIYCTLWEDYVDMFLNQADAADTRVQIIIIQLCRPNFYRGEMRACTSYNASQIFLNSDIPEIEDFRKQIIGNQSFSARLELSFEKSVVQTDDFFNGNIVVKTLDDIFTVEFLCYDFWQDGEHWICAKIDNVDCYAQWCYNACRKCTRKVEKKT...
XP_057782099.1
MFGNKLKEGLVYQIMNFMVKRNGTKWKVTDHVHRLELTPKTMISEVFPKCFPNYKFSFKSFEDISSIQTTDSVGMFDVIGVIAGKGFVKNDSESKMVELKLEDQNHNQIYCTLWEDYVDMFLNQADAADTRVQIIIIQLCRPNFYRGEMRACTSYNASQIFLNSDIPEIEDFRKQIIGNQSFSARLELSFEKSVVQTDDFFNGNIVVKTLDDIFTVEDGEHWICAKIDNVDCYAQWCYNACRKCTRKVEKKTGRFYCGNC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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