当前解析结果
SmilChr08G000719| 统一新 Gene ID | SmilChr08G000719 |
|---|---|
| 名称 | SmilChr08G000719 |
| 描述 | uncharacterized SmilChr08G000719 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5330655 - 5332565 / - |
| NCBI Gene ID | LOC130997982 |
|---|---|
| GeneID | 130997982 |
| locus_tag | - |
| NCBI Name | LOC130997982 |
| 原始查询 | SmilChr08G000719 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818926]; symbol=AT2G43250; hit=AT2G43250; species=arabidopsis; confidence=high |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818926]; symbol=AT2G43250; hit=AT2G43250; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G43250 (AT2G43250)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:818926] identity=53.7; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0490700- identity=43.7; qcov=1.05; evalue=1.13e-161; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997982 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057779403.1 |
| 2 | Chloroplast | 叶绿体 | 0.80000 | XP_057779403.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057779403.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057779403.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779403.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5331064 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C47 |
Chr8:5331064 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C47 |
Chr8:5331246 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B50 |
Chr8:5331246 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B50 |
Chr8:5331263 |
C |
CCG |
2bp_insertion | frameshift_variant | 24 | A11,A23,A3,B100,B105,B136,B18,B23,B43,B63,B65,B66,B84,B89,B91,B99,C11,C17,C28,C3,C49,C74,C82,D1 |
Chr8:5331265 |
TTC |
T |
2bp_deletion | frameshift_variant | 32 | A11,A20,A23,A3,B100,B105,B126,B131,B136,B18,B23,B25,B43,B58,B63,B65,B66,B84,B89,B91,B99,C11,C17,C28,C3,C46,C49,C59,C61,C74,C82,D1 |
Chr8:5331293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B9,C39 |
Chr8:5331423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:5331838 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B24 |
Chr8:5331838 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B24 |
Chr8:5331941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr8:5331981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。