Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000727`

染色体: Chr08 坐标: 5391734-5399072 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000727`
名称	SmilChr08G000727
描述	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5391734 - 5399072 / `-`

ID 对照

NCBI Gene ID	`LOC131000302`
GeneID	`131000302`
locus_tag	`-`
NCBI Name	`LOC131000302`
原始查询	`SmilChr08G000727`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like
产物	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like
Arabidopsis	`AT5G17920` (ATMS1) Cobalamin-independent synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831660] identity=80.5; qcov=0.955; evalue=0; confidence=high
Rice	`Os12g0624000` - identity=79.7; qcov=0.956; evalue=0; confidence=high
GO	GO:0003871 (5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity); GO:0008270 (zinc ion binding); GO:0009086 (GO:0009086)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01717 (Meth_synt_2); PF08267 (Meth_synt_1)
InterPro	-
eggNOG	-
NR	GeneID:131000302

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782127.1`
2	Cytoplasm	细胞质	1.00000	`XP_057782128.1`
3	Nucleus	细胞核	0.00000	`XP_057782127.1`
4	Chromosome	染色体	0.00000	`XP_057782127.1`
5	Centromere	着丝粒	0.00000	`XP_057782127.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5391841`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B67
`Chr8:5391854`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C82
`Chr8:5391854`	`AC`	`A`	1bp_deletion	CDS_variant	1	C82
`Chr8:5391855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C87
`Chr8:5393409`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B126
`Chr8:5393409`	`TC`	`T`	1bp_deletion	CDS_variant	1	B126
`Chr8:5393440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr8:5393499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:5393526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr8:5393527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A3,B40,C45
`Chr8:5393551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:5393584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B3,B88,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782127.1

801 aa

400

801

Meth_synt_1

Meth_synt_2

PF08267 Meth_synt_1 38-350 aa PF01717 Meth_synt_2 467-790 aa

XP_057782128.1

797 aa

398

797

Meth_synt_1

Meth_synt_2

PF08267 Meth_synt_1 38-350 aa PF01717 Meth_synt_2 467-790 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782127.1`	Pfam	`PF08267`	Meth_synt_1	Domain	38	350	4.2e-126	421.4	Cobalamin-independent synthase, N-terminal domain
`XP_057782127.1`	Pfam	`PF01717`	Meth_synt_2	Domain	467	790	6.6e-161	535.7	Cobalamin-independent synthase, Catalytic domain
`XP_057782128.1`	Pfam	`PF08267`	Meth_synt_1	Domain	38	350	4.1e-126	421.5	Cobalamin-independent synthase, N-terminal domain
`XP_057782128.1`	Pfam	`PF01717`	Meth_synt_2	Domain	467	790	6.5e-161	535.8	Cobalamin-independent synthase, Catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926144.1
TATACGAGACTACAATTTTTTGGAGCGAGGGGGAAGAAATCTGCCTCCTGCTTCCGAGCGCCTCCTCTCTCTCTCTCTCACTCTCACTCTCACTCTCTCACTCATACTTCCCTCTCATTGTTTTTACCTCTGATTATTTTTCCCAGTGGAGCTGCAGACTGCAAACGCAACCACCTCATACTTGCAAAAGTGCCCAGCTCAAAATAGGAAAGATGGAAAACGAATGAAGAGCAGGTTATGATTTATGAACAAAGCTATGT...

XM_057926145.1
TATACGAGACTACAATTTTTTGGAGCGAGGGGGAAGAAATCTGCCTCCTGCTTCCGAGCGCCTCCTCTCTCTCTCTCTCACTCTCACTCTCACTCTCTCACTCATACTTCCCTCTCATTGTTTTTACCTCTGATTATTTTTCCCAGTGGAGCTGCAGACTGCAAACGCAACCACCTCATACTTGCAAAAGTGCCCAGCTCAAAATAGGAAAGATGGAAAACGAATGAAGAGCAGGTTATGATTTATGAACAAAGCTATGT...

CDS

2 records

下载 CDS FASTA

LOC131000302
ATGAGGCACATCTCTCCCGCTCTCATCTCACCCAACTCCTCCATCTTTCTCTCCACCACACCACGCCTCAAAACTATGGTTTCCATCAAATTTCGTATCAGGTCAATGTCATCTCATATTGTAGGGTATCCTCGTGTGGGTCCCAAAAGAGAACTTAAGTTTGCACTGGAATCCTTCTGGGATGGAAAGAGCAGCGCCGAGGAATTGCAGAAGGTTGCAGCTGATCTCCGTGTCTCAATTTGGAAGCAGATGGCAGATGC...

Protein

2 records

下载 Protein FASTA

XP_057782127.1
MRHISPALISPNSSIFLSTTPRLKTMVSIKFRIRSMSSHIVGYPRVGPKRELKFALESFWDGKSSAEELQKVAADLRVSIWKQMADAGIKYIPSNMFSFYDQMLDTTTMLGAVPSRYGWKGGEIGFEVYFSMARGNGSVPAMEMTKWFDTNYHYIVPELGPDVDFSYGSHKAVQEYKEAKALGVDTIPVLVGPVSYLLLSKRAKGVKKSFSLLSLMDKILPVYKKVVTELKAAGASWIQYDEPTLVMDLDSHQLDAFTHA...

XP_057782128.1
MRHISPALISPNSSIFLSTTPRLKTMVSIKFRIRSMSSHIVGYPRVGPKRELKFALESFWDGKSSAEELQKVAADLRVSIWKQMADAGIKYIPSNMFSFYDQMLDTTTMLGAVPSRYGWKGGEIGFEVYFSMARGNGSVPAMEMTKWFDTNYHYIVPELGPDVDFSYGSHKAVQEYKEAKALGVDTIPVLVGPVSYLLLSKRAKGVKKSFSLLSLMDKILPVYKKVVTELKAAGASWIQYDEPTLVMDLDSHQLDAFTHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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