Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000739`

染色体: Chr08 坐标: 5472616-5476520 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000739`
名称	SmilChr08G000739
描述	BTB/POZ and MATH domain-containing protein 4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5472616 - 5476520 / `+`

ID 对照

NCBI Gene ID	`LOC131000317`
GeneID	`131000317`
locus_tag	`-`
NCBI Name	`LOC131000317`
原始查询	`SmilChr08G000739`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ and MATH domain-containing protein 4
产物	BTB/POZ and MATH domain-containing protein 4
Arabidopsis	`AT3G03740` (BPM4) BTB-POZ and MATH domain 4 [Source:NCBI gene (formerly Entrezgene);Acc:821170] identity=74.8; qcov=0.971; evalue=5.41e-178; confidence=high
Rice	`Os03g0792500` (OsMB5) - identity=74.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00651 (BTB); PF22486 (MATH_2); PF24570 (BACK_BPM_SPOP)
InterPro	-
eggNOG	-
NR	GeneID:131000317

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782147.1`
2	Cytosol	细胞质基质	0.60000	`XP_057782147.1`
3	Cytoplasm	细胞质	0.40000	`XP_057782147.1`
4	Chromosome	染色体	0.00000	`XP_057782147.1`
5	Centromere	着丝粒	0.00000	`XP_057782147.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5473002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr8:5473106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:5473220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:5474585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,D11
`Chr8:5474771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B140,B31,B68
`Chr8:5474783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:5475052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B3,D11
`Chr8:5475104`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C19
`Chr8:5475228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:5476195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr8:5476203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr8:5476280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782147.1

400 aa

200

400

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa PF24570 BACK_BPM_SPOP 309-361 aa

XP_057782148.1

353 aa

176

353

MATH_2

BTB

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa

XP_057782149.1

353 aa

176

353

MATH_2

BTB

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa

XP_057782150.1

353 aa

176

353

MATH_2

BTB

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa

XP_057782152.1

339 aa

170

339

MATH_2

BTB

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa

XP_057782153.1

339 aa

170

339

MATH_2

BTB

PF22486 MATH_2 28-159 aa PF00651 BTB 188-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782147.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.9e-32	112.5	MATH domain
`XP_057782147.1`	Pfam	`PF00651`	BTB	Domain	188	303	5.5e-24	85.2	BTB/POZ domain
`XP_057782147.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	309	361	6.9e-20	71.7	BPM/SPOP, BACK domain
`XP_057782148.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.3e-32	112.8	MATH domain
`XP_057782148.1`	Pfam	`PF00651`	BTB	Domain	188	303	3.4e-24	85.9	BTB/POZ domain
`XP_057782149.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.3e-32	112.8	MATH domain
`XP_057782149.1`	Pfam	`PF00651`	BTB	Domain	188	303	3.4e-24	85.9	BTB/POZ domain
`XP_057782150.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.3e-32	112.8	MATH domain
`XP_057782150.1`	Pfam	`PF00651`	BTB	Domain	188	303	3.4e-24	85.9	BTB/POZ domain
`XP_057782152.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.1e-32	112.9	MATH domain
`XP_057782152.1`	Pfam	`PF00651`	BTB	Domain	188	303	3.2e-24	85.9	BTB/POZ domain
`XP_057782153.1`	Pfam	`PF22486`	MATH_2	Domain	28	159	2.1e-32	112.9	MATH domain
`XP_057782153.1`	Pfam	`PF00651`	BTB	Domain	188	303	3.2e-24	85.9	BTB/POZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009093709.1
GGTGGCCAATAAGCCGGCGGCTGACGAAATTCAATAATCGCCCCCCACCCATAATTCCGACAACCAGAGAAAAAGAAAATACCAAAAAATCAAAAAAATCACAAATCCCCAAAAACAATTTGAATAAGAAAACCCTAATTCGCTTTCCCCCTCTCTCGTCTCCACCCTCCCAATTCATCGCTGAATACACACGCGACGCGTTTCGCCTGATTGTCACAACCGGAAATCAAGAAAATGGCGGAGACGCCGGATAGGACGCC...

XR_009093708.1
GGTGGCCAATAAGCCGGCGGCTGACGAAATTCAATAATCGCCCCCCACCCATAATTCCGACAACCAGAGAAAAAGAAAATACCAAAAAATCAAAAAAATCACAAATCCCCAAAAACAATTTGAATAAGAAAACCCTAATTCGCTTTCCCCCTCTCTCGTCTCCACCCTCCCAATTCATCGCTGAATACACACGCGACGCGTTTCGCCTGATTGTCACAACCGGAAATCAAGAAAATGGCGGAGACGCCGGATAGGACGCC...

CDS

6 records

下载 CDS FASTA

LOC131000317
ATGGCGGAGACGCCGGATAGGACGCCGAACTCTGCATCGCCGACGCGTTCGAGTTCGGTGACAGAGACGGTGAACGGGTCGCACCGGTTCGTGATACAGGGCTACTCTCTGGCGAAAGGCATGGGCGTCGGGAAACACATAGCGAGCGAAGAATTCACGGTGGGAGGGTACAAATGGGCGATTTATTTCTACCCCGACGGGAAGAACCCCGAGGATAATTCGACCTACGTGTCGGTGTTCATTGCGCTGGCGAGCGAGGG...

Protein

6 records

下载 Protein FASTA

XP_057782147.1
MAETPDRTPNSASPTRSSSVTETVNGSHRFVIQGYSLAKGMGVGKHIASEEFTVGGYKWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLMDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLRDDCLKINCTVGVVVSAIDCSRLHSIQVPDSDIGSDIGMLLENMEGSDITFNVSGEKFHAHKLVLAARSPKFRSELLEGVDTEVEEVMVPDMEPKVFKALLHFIYRDALAEN...

XP_057782148.1
MAETPDRTPNSASPTRSSSVTETVNGSHRFVIQGYSLAKGMGVGKHIASEEFTVGGYKWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLMDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLRDDCLKINCTVGVVVSAIDCSRLHSIQVPDSDIGSDIGMLLENMEGSDITFNVSGEKFHAHKLVLAARSPKFRSELLEGVDTEVEEVMVPDMEPKVFKALLHFIYRDALAEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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