当前解析结果
SmilChr08G000745| 统一新 Gene ID | SmilChr08G000745 |
|---|---|
| 名称 | SmilChr08G000745 |
| 描述 | molybdopterin synthase catalytic subunit |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5514403 - 5515899 / + |
| NCBI Gene ID | LOC131000326 |
|---|---|
| GeneID | 131000326 |
| locus_tag | - |
| NCBI Name | LOC131000326 |
| 原始查询 | SmilChr08G000745 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | molybdopterin synthase catalytic subunit |
| 产物 | molybdopterin synthase catalytic subunit |
| Arabidopsis | AT2G43760 (AT2G43760)molybdopterin biosynthesis MoaE family protein [Source:NCBI gene (formerly Entrezgene);Acc:818979] identity=75.3; qcov=0.926; evalue=1.28e-84; confidence=high |
| Rice | Os02g0140300 (MOCS2)- identity=62.2; qcov=0.932; evalue=1.38e-63; confidence=high |
| GO | GO:0005829 (cytosol); GO:0006777 (Mo-molybdopterin cofactor biosynthetic process); GO:0019008 (GO:0019008); GO:0030366 (molybdopterin synthase activity) |
| KEGG | smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil04122 (Sulfur relay system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02391 (MoaE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000326 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782163.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057782163.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057782163.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782163.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782163.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5515210 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:5515320 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr8:5515410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B31,C24,C26,C41 |
Chr8:5515438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B110,B134,C20,C79 |
Chr8:5515476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr8:5515526 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | A22 |
Chr8:5515526 |
T |
TC |
1bp_insertion | CDS_variant | 1 | A22 |
Chr8:5515617 |
GC |
G |
1bp_deletion | frameshift_variant | 32 | A18,B106,B111,B117,B120,B129,B131,B21,B30,B41,B5,B58,B59,B75,B78,B82,B88,B89,C14,C24,C3,C31,C35,C37,C48,C51,C53,C65,C70,C77,C78,D3 |
Chr8:5515618 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B51 |
Chr8:5515618 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782163.1PF02391
MoaE 19-126 aa
XP_057782164.1PF02391
MoaE 19-126 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782163.1 |
Pfam | PF02391 |
MoaE | Family | 19 | 126 | 1.8e-37 | 128.7 | MoaE protein |
XP_057782164.1 |
Pfam | PF02391 |
MoaE | Family | 19 | 126 | 1.8e-37 | 128.7 | MoaE protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。