当前解析结果
SmilChr08G000746| 统一新 Gene ID | SmilChr08G000746 |
|---|---|
| 名称 | SmilChr08G000746 |
| 描述 | G2/mitotic-specific cyclin S13-7-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5515904 - 5518282 / - |
| NCBI Gene ID | LOC131000324 |
|---|---|
| GeneID | 131000324 |
| locus_tag | - |
| NCBI Name | LOC131000324 |
| 原始查询 | SmilChr08G000746 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G2/mitotic-specific cyclin S13-7-like |
| 产物 | G2/mitotic-specific cyclin S13-7-like |
| Arabidopsis | AT5G06150 (CYC1BAT)Cyclin family protein [Source:NCBI gene (formerly Entrezgene);Acc:830502] identity=50.7; qcov=1.02; evalue=5.6e-145; confidence=high |
| Rice | Os01g0805600 (CycB1)- identity=49.9; qcov=1; evalue=2.24e-135; confidence=high |
| GO | GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition) |
| KEGG | - |
| Pfam | PF00134 (Cyclin_N); PF02984 (Cyclin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000324 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782160.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782160.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782160.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782160.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782160.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5516113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5516357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr8:5516635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr8:5516692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr8:5516948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C8 |
Chr8:5516970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5517175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5517334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:5517344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr8:5517444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B66 |
Chr8:5517769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B26,B31,C41 |
Chr8:5517787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B60,C38,C46,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782160.1PF00134
Cyclin_N 181-306 aa
PF02984
Cyclin_C 308-426 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782160.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 181 | 306 | 8.3e-46 | 155.5 | Cyclin, N-terminal domain |
XP_057782160.1 |
Pfam | PF02984 |
Cyclin_C | Domain | 308 | 426 | 4.7e-37 | 127.3 | Cyclin, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。