Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000748`

染色体: Chr08 坐标: 5526479-5530082 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000748`
名称	SmilChr08G000748
描述	bi-functional coumaroyl CoA and feruloyl CoA ortho-hydroxylase F6H2-2-1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5526479 - 5530082 / `-`

ID 对照

NCBI Gene ID	`LOC131000327`
GeneID	`131000327`
locus_tag	`-`
NCBI Name	`LOC131000327`
原始查询	`SmilChr08G000748`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bi-functional coumaroyl CoA and feruloyl CoA ortho-hydroxylase F6H2-2-1-like
产物	bi-functional coumaroyl CoA and feruloyl CoA ortho-hydroxylase F6H2-2-1-like
Arabidopsis	`AT3G13610` (AT3G13610) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820564] identity=47; qcov=0.978; evalue=2.88e-117; confidence=high
Rice	`Os03g0122300` (FLS) - identity=33.1; qcov=0.93; evalue=1.18e-53; confidence=low
GO	-
KEGG	smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF03171 (2OG-FeII_Oxy); PF14226 (DIOX_N)
InterPro	-
eggNOG	-
NR	GeneID:131000327

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782165.1`
2	Cytosol	细胞质基质	1.00000	`XP_057782165.1`
3	Nucleus	细胞核	0.20000	`XP_057782165.1`
4	Chromosome	染色体	0.00000	`XP_057782165.1`
5	Centromere	着丝粒	0.00000	`XP_057782165.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5526627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B5,C14,C35,C37
`Chr8:5526630`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B10
`Chr8:5526630`	`A`	`AT`	1bp_insertion	CDS_variant	1	B10
`Chr8:5526646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr8:5526647`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B108
`Chr8:5526647`	`C`	`CA`	1bp_insertion	CDS_variant	1	B108
`Chr8:5526683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr8:5526714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,C60,C75
`Chr8:5526715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C75
`Chr8:5526730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B89,C45,C70,D3
`Chr8:5526733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,B36,B44,B9,C10
`Chr8:5526755`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782165.1

357 aa

178

357

DIOX_N

2OG-FeII_Oxy

PF14226 DIOX_N 58-163 aa PF03171 2OG-FeII_Oxy 210-307 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782165.1`	Pfam	`PF14226`	DIOX_N	Family	58	163	7.4e-21	75.7	non-haem dioxygenase in morphine synthesis N-terminal
`XP_057782165.1`	Pfam	`PF03171`	2OG-FeII_Oxy	Domain	210	307	1.3e-27	96.7	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926182.1
GATCGATGGAGAAACAGAAAATGACATGGAAACGTGAAGATCTGATAGATTTCTTGATAAAGAAAGGCAACGGCATCAAGGGGCTGTCGGAGCTGAAGCTGGCAAAGATCCCAGATGACTTCATCCAGCCCCCTCACCAAAGGCTAAGCCACACCAAAGTCGCAACCCAGCACTCCATACCCATCATCGACGTCTCCAACTGGGATGATCCCAGAGTCTCCCAATCCATCTGCGCCGCCGCCGCCGACTGGGGTTTCTTT...

CDS

1 records

下载 CDS FASTA

LOC131000327
ATGGAGAAACAGAAAATGACATGGAAACGTGAAGATCTGATAGATTTCTTGATAAAGAAAGGCAACGGCATCAAGGGGCTGTCGGAGCTGAAGCTGGCAAAGATCCCAGATGACTTCATCCAGCCCCCTCACCAAAGGCTAAGCCACACCAAAGTCGCAACCCAGCACTCCATACCCATCATCGACGTCTCCAACTGGGATGATCCCAGAGTCTCCCAATCCATCTGCGCCGCCGCCGCCGACTGGGGTTTCTTTCAGAT...

Protein

1 records

下载 Protein FASTA

XP_057782165.1
MEKQKMTWKREDLIDFLIKKGNGIKGLSELKLAKIPDDFIQPPHQRLSHTKVATQHSIPIIDVSNWDDPRVSQSICAAAADWGFFQIINHGIPIGVLQDVKNATHDFFNLPVAERSKYLKENSPTPSIVLKTSFSHSVDKVLEWKDSLLHFTGTHDDGSHLWPNLTRDRVLEYTKLARPVIGNLVSVLLSGINVQQKQTQSDLVGSVDVSLLCYPKCPNPDLASGATPHSDVSVLTLLLQDDVGGLYVRASQGEDQWIHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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