Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000753`

染色体: Chr08 坐标: 5553118-5557335 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000753`
名称	SmilChr08G000753
描述	uncharacterized SmilChr08G000753
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5553118 - 5557335 / `+`

ID 对照

NCBI Gene ID	`LOC131000332`
GeneID	`131000332`
locus_tag	`-`
NCBI Name	`LOC131000332`
原始查询	`SmilChr08G000753`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233]; symbol=AT2G26920; hit=AT2G26920; species=arabidopsis; confidence=high
产物	Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233]; symbol=AT2G26920; hit=AT2G26920; species=arabidopsis; confidence=high
Arabidopsis	`AT2G26920` (AT2G26920) Ubiquitin-associated/translation elongation factor EF1B protein [Source:NCBI gene (formerly Entrezgene);Acc:817233] identity=46.9; qcov=1.04; evalue=8.62e-158; confidence=high
Rice	`Os05g0409000` - identity=46.9; qcov=0.922; evalue=6.81e-121; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF22562 (UBA_7)
InterPro	-
eggNOG	-
NR	GeneID:131000332

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057782174.1`
2	Cytoplasm	细胞质	0.40000	`XP_057782174.1`
3	Nucleus	细胞核	0.00000	`XP_057782174.1`
4	Chromosome	染色体	0.00000	`XP_057782174.1`
5	Centromere	着丝粒	0.00000	`XP_057782174.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5555313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:5555410`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr8:5555793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B53,B58
`Chr8:5555895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B118,B87,D9
`Chr8:5555934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B89,C45,C70,D3
`Chr8:5555988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr8:5556567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B118,B87,D9
`Chr8:5556656`	`TTA`	`T`	2bp_deletion	frameshift_variant	10	A4,A7,B17,B38,B39,B66,B8,B80,C65,C72
`Chr8:5556659`	`GC`	`G`	1bp_deletion	frameshift_variant	10	A4,A7,B17,B38,B39,B66,B8,B80,C65,C72
`Chr8:5556840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr8:5556861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,A21,A22,A8,C57
`Chr8:5556879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A3,B28,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782174.1

639 aa

320

639

UBA_7

PF22562 UBA_7 161-200 aa

XP_057782176.1

639 aa

320

639

UBA_7

PF22562 UBA_7 161-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782174.1`	Pfam	`PF22562`	UBA_7	Domain	161	200	2.1e-07	31.4	UBA-like domain
`XP_057782176.1`	Pfam	`PF22562`	UBA_7	Domain	161	200	2.1e-07	31.4	UBA-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926193.1
GGAAAAACCCTAATTGCTGTCGATTCGGTTTTATTTTTCAGCCTCGCATTACCCCCTCTCCCCTCTTTCTCTCTACATATATAAAGACATTTCGCAATCCATTTTTTCTCTCTCTATATAACATTTCGCGAATTCTCTGTCTGTTCTGACACTAAATCCAATCCTCCATCCTCGTACGACAACAATTTGACGCCGCGGCGCTCGATATTGTCATCGATCGCATCGATCCGTTAAGAAAATAGAGCTTGAAGTTGCAGATA...

XM_057926191.1
AAAAACCCTAATTGCTGTCGATTCGGTTTTATTTTTCAGCCTCGCATTACCCCCTCTCCCCTCTTTCTCTCTACATATATAAAGACATTTCGCAATCCATTTTTTCTCTCTCTATATAACATTTCGCGAATTCTCTGTCTGTTCTGACACTAAATCCAATCCTCCATCCTCGTACGACAACAATTTGACGCCGCGGCGCTCGATATTGTCATCGATCGCATCGATCCGTTAAGTTTTGCAGAAAATAGAGCTTGAAGTTG...

CDS

2 records

下载 CDS FASTA

LOC131000332
ATGTCTCCAGCATCCAAATCTAAGTCCAAAGATAAAAAGATTGGCAAGGAAGCTCCAAAGAATTCTCTAAAGCCTTTGGGTCATGTTAATACCAGTAGTGGGGCCCCAGCAAGTGGATACAATCCTGTTCTGGGAACATTTCATACATTTGAATCAGCACCAGTGCCTTCTGCCAGTCCGCTTCATGTTAATGGTCGTTTCCGGAATATAGATGACACCGATGATCATAATGGAAGTTCATCAGGAACTGGCGTTGAGTA...

Protein

2 records

下载 Protein FASTA

XP_057782174.1
MSPASKSKSKDKKIGKEAPKNSLKPLGHVNTSSGAPASGYNPVLGTFHTFESAPVPSASPLHVNGRFRNIDDTDDHNGSSSGTGVEYDSISNNGSWSGDSEDHKEKPSQPLTRQDIIPGADNDKREKIRQKNERKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSQERATMALILNEGRVEESVSWLFEGGEEDKKLEHNLDGGGNLKIDISDELARITDLEIRYKASKQEVERAVVSCEGDLDRAEESLKT...

XP_057782176.1
MSPASKSKSKDKKIGKEAPKNSLKPLGHVNTSSGAPASGYNPVLGTFHTFESAPVPSASPLHVNGRFRNIDDTDDHNGSSSGTGVEYDSISNNGSWSGDSEDHKEKPSQPLTRQDIIPGADNDKREKIRQKNERKHQRQKERRAQELHERCSGYLMSRKLEALAQQLVAMGFSQERATMALILNEGRVEESVSWLFEGGEEDKKLEHNLDGGGNLKIDISDELARITDLEIRYKASKQEVERAVVSCEGDLDRAEESLKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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