Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000763`

染色体: Chr08 坐标: 5628730-5633743 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000763`
名称	SmilChr08G000763
描述	uncharacterized SmilChr08G000763
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5628730 - 5633743 / `+`

ID 对照

NCBI Gene ID	`LOC131000344`
GeneID	`131000344`
locus_tag	`-`
NCBI Name	`LOC131000344`
原始查询	`SmilChr08G000763`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AICARFT/IMPCHase bienzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818069]; symbol=AT2G35040; hit=AT2G35040; species=arabidopsis; confidence=high
产物	AICARFT/IMPCHase bienzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818069]; symbol=AT2G35040; hit=AT2G35040; species=arabidopsis; confidence=high
Arabidopsis	`AT2G35040` (AT2G35040) AICARFT/IMPCHase bienzyme family protein [Source:NCBI gene (formerly Entrezgene);Acc:818069] identity=83.7; qcov=1; evalue=0; confidence=high
Rice	`Os08g0206600` (OJ1119_C05.21-1) - identity=81.2; qcov=0.972; evalue=0; confidence=high
GO	GO:0003937 (IMP cyclohydrolase activity); GO:0004643 (phosphoribosylaminoimidazolecarboxamide formyltransferase activity); GO:0005829 (cytosol); GO:0006189 ('de novo' IMP biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01808 (AICARFT_IMPCHas); PF02142 (MGS)
InterPro	-
eggNOG	-
NR	GeneID:131000344

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782193.1`
2	Cytoplasm	细胞质	1.00000	`XP_057782197.1`
3	Chloroplast stroma	叶绿体基质	1.00000	`XP_057782193.1`
4	Cytosol	细胞质基质	1.00000	`XP_057782197.1`
5	Nucleus	细胞核	0.00000	`XP_057782193.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5629638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr8:5629651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B133,B140,C65
`Chr8:5629657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B80,C36
`Chr8:5629680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B106,B120
`Chr8:5629681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr8:5629705`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr8:5629706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr8:5629711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A11,B118,B9,C29
`Chr8:5629724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:5629733`	`C`	`CG`	1bp_insertion	frameshift_variant	3	B102,C29,D7
`Chr8:5629733`	`C`	`CG`	1bp_insertion	CDS_variant	3	B102,C29,D7
`Chr8:5629748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B111,B30,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782193.1

607 aa

304

607

MGS

AICARFT_IMPCHas

PF02142 MGS 102-210 aa PF01808 AICARFT_IMPCHas 216-539 aa

XP_057782194.1

607 aa

304

607

MGS

AICARFT_IMPCHas

PF02142 MGS 102-210 aa PF01808 AICARFT_IMPCHas 216-539 aa

XP_057782195.1

607 aa

304

607

MGS

AICARFT_IMPCHas

PF02142 MGS 102-210 aa PF01808 AICARFT_IMPCHas 216-539 aa

XP_057782197.1

543 aa

272

543

MGS

AICARFT_IMPCHas

PF02142 MGS 38-146 aa PF01808 AICARFT_IMPCHas 152-475 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782193.1`	Pfam	`PF02142`	MGS	Domain	102	210	2e-20	73.4	MGS-like domain
`XP_057782193.1`	Pfam	`PF01808`	AICARFT_IMPCHas	Family	216	539	7.5e-113	377.8	AICARFT/IMPCHase bienzyme
`XP_057782194.1`	Pfam	`PF02142`	MGS	Domain	102	210	2e-20	73.4	MGS-like domain
`XP_057782194.1`	Pfam	`PF01808`	AICARFT_IMPCHas	Family	216	539	7.5e-113	377.8	AICARFT/IMPCHase bienzyme
`XP_057782195.1`	Pfam	`PF02142`	MGS	Domain	102	210	2e-20	73.4	MGS-like domain
`XP_057782195.1`	Pfam	`PF01808`	AICARFT_IMPCHas	Family	216	539	7.5e-113	377.8	AICARFT/IMPCHase bienzyme
`XP_057782197.1`	Pfam	`PF02142`	MGS	Domain	38	146	1.8e-20	73.6	MGS-like domain
`XP_057782197.1`	Pfam	`PF01808`	AICARFT_IMPCHas	Family	152	475	6.1e-113	378.1	AICARFT/IMPCHase bienzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926211.1
TTTTCTATTTTCTTTTTCTTTATAATTTTCTTTTTTCTCTTCTTCCCTCTCCCGCTTCTCAGTTATCAGTCACCGGTTCTCTCTCTAAAACAAAAATCAGGCCTCTTCGCCGCCGCCTCTCCCTTCCTAAGATCCGGCAACTCTTCGCCGTCGACCCCCCTCATCTCTCTATCCAATTTCTCTCCCCCTTGCTCTCTCTCACTAACTCGGCCGTCCGGCGAGATATTACCGGCACCGCCGCTTCCCGCCTCCTACGGTCG...

XM_057926212.1
TTTTCTTTTTCTTTATAATTTTCTTTTTTCTCTTCTTCCCTCTCCCGCTTCTCAGTTATCAGTCACCGGTTCTCTCTCTAAAACAAAAATCAGGCCTCTTCGCCGCCGCCTCTCCCTTCCTAAGATCCGGCAACTCTTCGCCGTCGACCCCCCTCATCTCTCTATCCAATTTCTCTCCCCCTTGCTCTCTCTCACTAACTCGGCCGTCCGGCGAGATATTACCGGCACCGCCGCTTCCCGCCTCCTACGGTCGCGCGTGG...

CDS

4 records

下载 CDS FASTA

LOC131000344
ATGCTGGCTTTAGGCACCGCTTCCGCAGTTTCTACCAGCGCCACCGTCACCTCCTCACTTGTCAGCGCAGGCCACCAGCTGCAAAGTGTCGCCTGCACATCCTCCTCGGTTTTTCACCCCATCGCTGCCTTTCCGTCGCACCAATTGTCTGCGACCACTTCACATAACTTAAATTCGTTTCGAGTTAAGGGGATGGCAGAAACTCTTTCAACTCCGAAGATGGAATCCAAGCCCACACTTTCTGGAAAGAAGCAGGCGTT...

Protein

4 records

下载 Protein FASTA

XP_057782193.1
MLALGTASAVSTSATVTSSLVSAGHQLQSVACTSSSVFHPIAAFPSHQLSATTSHNLNSFRVKGMAETLSTPKMESKPTLSGKKQALISLSDKKDLSLLGVGLQELGFTIVSTGGTTSALEGAGVAVTKVEELTRFPEMLDGRVKTLHPNVHGGILARRDQESHMEALNNHGIGTFDVVVVNLYPFYDKVSASTGISFEDGIENIDIGGPAMIRAAAKNHQDVLVVVDSSDYPELLGYLKEGQNDEQFRRRLAWKAFQHV...

XP_057782194.1
MLALGTASAVSTSATVTSSLVSAGHQLQSVACTSSSVFHPIAAFPSHQLSATTSHNLNSFRVKGMAETLSTPKMESKPTLSGKKQALISLSDKKDLSLLGVGLQELGFTIVSTGGTTSALEGAGVAVTKVEELTRFPEMLDGRVKTLHPNVHGGILARRDQESHMEALNNHGIGTFDVVVVNLYPFYDKVSASTGISFEDGIENIDIGGPAMIRAAAKNHQDVLVVVDSSDYPELLGYLKEGQNDEQFRRRLAWKAFQHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器