当前解析结果
SmilChr08G000764| 统一新 Gene ID | SmilChr08G000764 |
|---|---|
| 名称 | SmilChr08G000764 |
| 描述 | uncharacterized SmilChr08G000764 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5640563 - 5643284 / - |
| NCBI Gene ID | LOC131000345 |
|---|---|
| GeneID | 131000345 |
| locus_tag | - |
| NCBI Name | LOC131000345 |
| 原始查询 | SmilChr08G000764 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high |
| 产物 | Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G02100 (AT4G02100)Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142] identity=62.9; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0304500- identity=53; qcov=0.896; evalue=1.21e-161; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000345 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057782198.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057782198.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057782198.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782198.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5640940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:5641030 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:5641042 |
C |
CAG |
2bp_insertion | frameshift_variant | 88 | A13,A16,A18,A23,A24,A4,A5,B1,B100,B105,B106,B109,B11,B111,B114,B115,B119,B120,B123,B124,B128,B129,B132,B133,B138,B139,B14,B18,B21,B24,B27,B34,B35,B38,B39,B4,B42,B43,B48,B51,B54,B59,B6,B61,B64,B68,B70,B73,B74,B77,B79,B8,B82,B88,B9,C1,C11,C14,C15,C17,C18,C25,C26,C27,C3,C30,C34,C35,C37,C39,C4,C42,C49,C51,C54,C58,C6,C60,C67,C69,C7,C72,C8,C84,D1,D4,D5,D7 |
Chr8:5641263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:5641277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:5641320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:5641388 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A2,B26,B58,C10 |
Chr8:5641475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C82 |
Chr8:5641499 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C65 |
Chr8:5641607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B58,C31 |
Chr8:5641676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B24,B25 |
Chr8:5641762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,B13 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。