当前解析结果
SmilChr08G000780| 统一新 Gene ID | SmilChr08G000780 |
|---|---|
| 名称 | SmilChr08G000780 |
| 描述 | uncharacterized SmilChr08G000780 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5743293 - 5745794 / + |
| NCBI Gene ID | LOC131000361 |
|---|---|
| GeneID | 131000361 |
| locus_tag | - |
| NCBI Name | LOC131000361 |
| 原始查询 | SmilChr08G000780 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-dependent phosphotriesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816177]; symbol=AT2G16760; hit=AT2G16760; species=arabidopsis; confidence=high |
| 产物 | Calcium-dependent phosphotriesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816177]; symbol=AT2G16760; hit=AT2G16760; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G16760 (AT2G16760)Calcium-dependent phosphotriesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816177] identity=57.5; qcov=1.02; evalue=6.08e-131; confidence=high |
| Rice | Os03g0307400- identity=49.7; qcov=0.919; evalue=8.97e-83; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000361 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057782217.1 |
| 2 | Cell wall | 细胞壁 | 0.40000 | XP_057782217.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057782217.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782217.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782217.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5743446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:5743502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5743646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5743677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,D6 |
Chr8:5743773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B115,C16,C75,C80 |
Chr8:5745271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:5745412 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr8:5745448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:5745478 |
GGA |
G |
2bp_deletion | frameshift_variant | 2 | C32,C68 |
Chr8:5745478 |
GGA |
G |
2bp_deletion | CDS_variant | 2 | C32,C68 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。