当前解析结果
SmilChr08G000782| 统一新 Gene ID | SmilChr08G000782 |
|---|---|
| 名称 | SmilChr08G000782 |
| 描述 | histone-lysine N-methyltransferase EZA1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5751986 - 5761135 / - |
| NCBI Gene ID | LOC131000363 |
|---|---|
| GeneID | 131000363 |
| locus_tag | - |
| NCBI Name | LOC131000363 |
| 原始查询 | SmilChr08G000782 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | histone-lysine N-methyltransferase EZA1 |
| 产物 | histone-lysine N-methyltransferase EZA1 |
| Arabidopsis | AT4G02020 (SWN)SET domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828165] identity=52.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0307800 (IEZ1)- identity=49; qcov=1.06; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0006338 (chromatin remodeling); GO:0031519 (PcG protein complex); GO:0042054 (histone methyltransferase activity) |
| KEGG | smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00856 (SET); PF18264 (preSET_CXC); PF21358 (Ezh2_MCSS); PF25996 (HTH_CLF_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000363 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782219.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782219.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782219.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782219.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782219.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5752811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B90,B92,C52,C56 |
Chr8:5753468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B85,C10 |
Chr8:5753882 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:5753883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B88,D8 |
Chr8:5755354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:5756422 |
CA |
C |
1bp_deletion | frameshift_variant | 117 | A1,A10,A11,A14,A16,A19,A2,A21,A23,A4,A6,A8,B100,B104,B105,B106,B107,B108,B11,B112,B113,B115,B124,B125,B126,B128,B129,B130,B132,B133,B137,B138,B139,B140,B16,B18,B20,B21,B25,B29,B3,B30,B35,B38,B39,B44,B45,B48,B49,B50,B52,B58,B59,B6,B64,B65,B72,B73,B75,B76,B77,B8,B81,B82,B84,B85,B89,B93,B94,B95,B97,C11,C12,C13,C16,C17,C18,C19,C2,C22,C26,C27,C29,C3,C30,C32,C33,C38,C39,C40,C41,C49,C50,C51,C54,C55,C61,C62,C63,C65,C67,C68,C69,C7,C70,C71,C72,C76,C8,C83,C84,D1,D10,D11,D3,D8,D9 |
Chr8:5756441 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C29 |
Chr8:5756635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,D6 |
Chr8:5756679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:5756680 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B100 |
Chr8:5756680 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B100 |
Chr8:5757351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782219.1PF25996
HTH_CLF_N 180-224 aa
PF21358
Ezh2_MCSS 255-282 aa
PF18264
preSET_CXC 632-663 aa
PF00856
SET 704-807 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782219.1 |
Pfam | PF25996 |
HTH_CLF_N | Domain | 180 | 224 | 2.4e-17 | 63.0 | Histone-lysine N-methyltransferase CLF, N-terminal HTH domain |
XP_057782219.1 |
Pfam | PF21358 |
Ezh2_MCSS | Domain | 255 | 282 | 1.1e-06 | 29.0 | Ezh2, MCSS domain |
XP_057782219.1 |
Pfam | PF18264 |
preSET_CXC | Domain | 632 | 663 | 2.2e-07 | 31.9 | CXC domain |
XP_057782219.1 |
Pfam | PF00856 |
SET | Family | 704 | 807 | 4.2e-21 | 76.1 | SET domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。