Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000788`

染色体: Chr08 坐标: 5811088-5815369 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000788`
名称	SmilChr08G000788
描述	DEAD-box ATP-dependent RNA helicase 24
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5811088 - 5815369 / `+`

ID 对照

NCBI Gene ID	`LOC131000370`
GeneID	`131000370`
locus_tag	`-`
NCBI Name	`LOC131000370`
原始查询	`SmilChr08G000788`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DEAD-box ATP-dependent RNA helicase 24
产物	DEAD-box ATP-dependent RNA helicase 24
Arabidopsis	`AT2G47330` (AT2G47330) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819346] identity=79.2; qcov=0.922; evalue=0; confidence=high
Rice	`Os03g0308500` (OsRH24) - identity=77.6; qcov=0.922; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00270 (DEAD); PF00271 (Helicase_C)
InterPro	-
eggNOG	-
NR	GeneID:131000370

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782225.1`
2	Nucleolus	核仁	0.40000	`XP_057782225.1`
3	Cytoplasm	细胞质	0.20000	`XP_057782225.1`
4	Chromosome	染色体	0.00000	`XP_057782226.1`
5	Centromere	着丝粒	0.00000	`XP_057782226.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5811400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C19
`Chr8:5811743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:5812720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:5813152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A14,B23
`Chr8:5813533`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B14
`Chr8:5813533`	`AG`	`A`	1bp_deletion	CDS_variant	1	B14
`Chr8:5814529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr8:5814552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B40,B88
`Chr8:5814561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,D11
`Chr8:5814585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:5814586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:5814626`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	A18,A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782225.1

772 aa

386

772

DEAD

Helicase_C

PF00270 DEAD 253-423 aa PF00271 Helicase_C 470-569 aa

XP_057782226.1

664 aa

332

664

DEAD

Helicase_C

PF00270 DEAD 253-423 aa PF00271 Helicase_C 470-569 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782225.1`	Pfam	`PF00270`	DEAD	Domain	253	423	2.3e-51	174.6	DEAD/DEAH box helicase
`XP_057782225.1`	Pfam	`PF00271`	Helicase_C	Domain	470	569	6.1e-30	104.4	Helicase conserved C-terminal domain
`XP_057782226.1`	Pfam	`PF00270`	DEAD	Domain	253	423	1.4e-51	175.2	DEAD/DEAH box helicase
`XP_057782226.1`	Pfam	`PF00271`	Helicase_C	Domain	470	569	3.8e-30	105.1	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926242.1
CATTTCTCCTCCTAGAAACCCTTTACCACTGCTGCTAATATTAGTTCCAGATTTCCCCCAAAACCAATTCTAGGGTTTAATAGTTTCCCAAAACAATGTCGAAACGAAAATTCGGATTCGAGGGCTTCGGCATCAATCGCCAAGCTACGTACAACTTCGAGCACTCCCAGCAGCCTCAACGCTTGTACGTTCCTCCATCATCCCGCGGCGGCGGCGGCGAAGAGGAAGACGACGACATCGATAATATCGAGTATGCCGAC...

XM_057926243.1
TCTCCTCCTAGAAACCCTTTACCACTGCTGCTAATATTAGTTCCAGATTTCCCCCAAAACCAATTCTAGGGTTTAATAGTTTCCCAAAACAATGTCGAAACGAAAATTCGGATTCGAGGGCTTCGGCATCAATCGCCAAGCTACGTACAACTTCGAGCACTCCCAGCAGCCTCAACGCTTGTACGTTCCTCCATCATCCCGCGGCGGCGGCGGCGAAGAGGAAGACGACGACATCGATAATATCGAGTATGCCGACGATC...

CDS

2 records

下载 CDS FASTA

LOC131000370
ATGTCGAAACGAAAATTCGGATTCGAGGGCTTCGGCATCAATCGCCAAGCTACGTACAACTTCGAGCACTCCCAGCAGCCTCAACGCTTGTACGTTCCTCCATCATCCCGCGGCGGCGGCGGCGAAGAGGAAGACGACGACATCGATAATATCGAGTATGCCGACGATCGTGAAACTGCAAACGACGTGGTTTCGGACAATAACAACGGCGCAGCGGCTGATGACGATGAAGTTGATCCTCTTGACGCGTTTATGGAAGG...

Protein

2 records

下载 Protein FASTA

XP_057782225.1
MSKRKFGFEGFGINRQATYNFEHSQQPQRLYVPPSSRGGGGEEEDDDIDNIEYADDRETANDVVSDNNNGAAADDDEVDPLDAFMEGLQEEIKAAPPPKAKDKLDKYKDDVEDDPMESFVMAKKDLGLQLAADALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPVVLDKKKIEPIPPLDHSLIDYEAFNKDFYDEKPSISGMSEQDVAEYRMSLAIRVSGFDVPRPIKTFEECGFSAELMKAIAKQAYEKPTPIQCQAL...

XP_057782226.1
MSKRKFGFEGFGINRQATYNFEHSQQPQRLYVPPSSRGGGGEEEDDDIDNIEYADDRETANDVVSDNNNGAAADDDEVDPLDAFMEGLQEEIKAAPPPKAKDKLDKYKDDVEDDPMESFVMAKKDLGLQLAADALHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPVVLDKKKIEPIPPLDHSLIDYEAFNKDFYDEKPSISGMSEQDVAEYRMSLAIRVSGFDVPRPIKTFEECGFSAELMKAIAKQAYEKPTPIQCQAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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